PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G11040.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 388aa    MW: 42544.9 Da    PI: 6.7586
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G11040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.7e-1096136444
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                       k +rr+++NReAAr+sR RKka+i++Le    +L    ++
  OGLUM06G11040.1  96 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQE 136
                      589**************************977777655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-793192IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.58895139IPR004827Basic-leucine zipper domain
PfamPF001701.5E-797137IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-897141No hitNo description
SuperFamilySSF579591.25E-797140No hitNo description
PROSITE patternPS000360100115IPR004827Basic-leucine zipper domain
PfamPF141441.2E-31182258IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAAHQGMAAA TAADRFCLPR MAAAAAAASQ VENWGDSGVV VSSPFTDDTS TDLDDSADKH  60
HLHALMGGGG DGGGDDAGEQ RGADSSAVSK ERRGDQKMQR RLAQNREAAR KSRMRKKAYI  120
QQLESSRSKL MHLEQELQRA RQQGIFIATG GSGDHGHSIG GNGGTLAFDL EYARWLDEHQ  180
RHINDLRVAL NAQMSDDELR ELVDAVMMHY DQVFRLKSFA TKSDVFHVLS GMWMSPAERF  240
FMWLGGFRSS ELLKVLASHL EPLTDQQLMG ICNLQQSSQQ AEDALSQGME ALQQTLGDTL  300
VSAAATVVGG GGGADNVTNY MGQMAIAMAK LTTLENFLRQ ADLLRHQTLQ QMHRILTTRQ  360
AARALLVISD YFSRLRALSS LWLARPRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097190.0AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881815.10.0transcription factor TGAL3-like isoform X2
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0E0A7X50.0A0A0E0A7X5_9ORYZ; Uncharacterized protein
STRINGOGLUM06G11040.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-120bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]