PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G06280.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 446aa    MW: 47606.3 Da    PI: 5.1041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G06280.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-12295340555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  OGLUM06G06280.2 295 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 340
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.23E-13288344No hitNo description
SuperFamilySSF474593.53E-17288350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-17292349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-9295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSN NLRSNSIPPG VLQCNSTSGT  120
FDAKLDTPAP TLCSAFQNVS SFMEPVNLDA FGFQGAQNVA MLNKTSLPNG NPSLFDNAAI  180
ASLHDSKEFL NGGSIPSFGT VLQALGAGGL KAAQQEQNIR NIPLPTFTSG SHLAVTDAQG  240
PPLPSKIPPL IHDHNSEYPI NHSSDVEPQA NSAPGNSANA KPRTRARRGQ ATDPHSIAER  300
LRREKISERM KNLQDLVPNS NKADKASMLD EIIDYVKFLQ LQVKVLSMSR LGAPGAVLPL  360
LRESQTECHS NPSLSASTIS QGAPEIPDSE DSSAFEQEVV KLMETSITSA MQYLQNKGLC  420
LMPIALASAI SNQKGMTAAA AIPPEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0E0A6730.0A0A0E0A673_9ORYZ; Uncharacterized protein
STRINGOGLUM06G06280.30.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-57LJRHL1-like 3