PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G04550.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 474aa    MW: 52318.9 Da    PI: 7.9478
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G04550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.2e-06203226123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C  Cg++F+++ +L+rH r  H
  OGLUM06G04550.1 203 YSCAVCGRRFPTRPDLTRHFRQlH 226
                      99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-5201229No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4202229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.256203231IPR007087Zinc finger, C2H2
SMARTSM003552.9E-4203226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205226IPR007087Zinc finger, C2H2
CDDcd061671.06E-10221353No hitNo description
Gene3DG3DSA:3.40.50.10101.9E-4268342IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEAEWHIPSS PPNPKSASRL LPSLSITTPR PTPNQTPCGR DLAALAMPPP LSFLHLAANP  60
TPLHASPLRR ARLRHRLSLR TDHPSRRAVA SASASAGENP STPGGPIADV EMVRGKDGVW  120
TARPPTVVVL WDLDNKPPRG PPFPAATALR DAASLLGRVV SVSAFANRHA FSHVPAWVAD  180
ERRERRAMDR AERAGAASPP VPYSCAVCGR RFPTRPDLTR HFRQLHQRER NKKLSRLRSL  240
KGKKRQKFRE RFISGNTKYD DAARELLTPK VGYGLAAELR RAGVHVRTVS DKPQAADHAL  300
KRQVKHSVAC GVDWLVLVSD DSDFTDTVRK ARAADLRTVV VGDGCRALGS VADIWLPWDR  360
VENGEVDEDM LRNGTHMGFR DEEEDEQDDD EFIVDWDTSD LDGVVDDIVA TRTKFFGATT  420
MSAFADEEIM DGILGVGING GDMLWSSDDE DEDGLVLYCY SANQKASSHR HKHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234820.0AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641376.20.0uncharacterized protein LOC4340243
TrEMBLA0A0E0A5J70.0A0A0E0A5J7_9ORYZ; Uncharacterized protein
STRINGOGLUM06G04550.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.13e-92C2H2-like zinc finger protein