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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G01600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 604aa MW: 64424.2 Da PI: 6.3018 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 396.2 | 3.6e-121 | 204 | 581 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPi 90 lv++L++cA+ +s+g++e+a+ +Larl e+asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++ ++ ++al++++ ++Pi OGLUM06G01600.1 204 LVRALTACADSLSAGNHEAANYYLARLGEMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAITPI 297 6899*******************************************************************9989999**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++f h+t N+ +l+++eg+ervH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+ s++el+etg rLa++A++lg+ fef++ v++ OGLUM06G01600.1 298 PRFLHFTLNERLLREFEGHERVHVIDFDIKQGLQWPGLLQSLAARAVPPAHVRITGVGE----SRQELQETGARLARVAAALGLAFEFHA-VVD 386 ***********************************************************....9**************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklp 276 rled++l++L+vk+gE++aVn+vl++hrll+++++l++ +L l +s+ ++++ + e+e ns+++ +rf++al+yy+a fd++ +a+lp OGLUM06G01600.1 387 RLEDVRLWMLHVKRGECVAVNCVLAMHRLLRDDAALTD----FLGLARSTGATILLLGEHEGGGlNSGRWEARFARALRYYAAAFDAVdAAGLP 476 **********************************9999....*******************8777***********************9999** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgW 362 ++s +r+k E++ ++rei+n+va eg er+erhe+++ Wr+r+e+ GFk++ ++e++a+q +++ r+++ d y+v+ + ++l+l W OGLUM06G01600.1 477 EASPARAKAEEM-FAREIRNAVAFEGPERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYTVQAHgggggggGEALTLRW 569 ************.*******************************9679**********************888****99888888677888*** PP GRAS 363 kdrpLvsvSaWr 374 d+pL++v+aW+ OGLUM06G01600.1 570 LDQPLYTVTAWT 581 ***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.179 | 178 | 554 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-118 | 204 | 581 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MSTAQRFDIL PCGFSKRGSR GDGAAPRVAG DARSGATTCS FRTHPAPPVT QSVSWGAKPE 60 PGGNGNGAHR AVKRAHDEDA VEEYGPIVRA KRTRMGGDGD EVWFHQSIAG TMQATAAGEG 120 EEAEEEKVFL VPSAAAFPHG MAAAGPSLAA AKKEEYSKSP SDSSSSSGTD GGSSAMMPPP 180 QPPEFDARNG VPAPGQAERE ALELVRALTA CADSLSAGNH EAANYYLARL GEMASPAGPT 240 PMHRVAAYFT EALALRVVRM WPHMFDIGPP RELTDDAFGG GDDDAMALRI LNAITPIPRF 300 LHFTLNERLL REFEGHERVH VIDFDIKQGL QWPGLLQSLA ARAVPPAHVR ITGVGESRQE 360 LQETGARLAR VAAALGLAFE FHAVVDRLED VRLWMLHVKR GECVAVNCVL AMHRLLRDDA 420 ALTDFLGLAR STGATILLLG EHEGGGLNSG RWEARFARAL RYYAAAFDAV DAAGLPEASP 480 ARAKAEEMFA REIRNAVAFE GPERFERHES FAGWRRRMED GGGFKNAGIG EREAMQGRMI 540 ARMFGPDKYT VQAHGGGGGG GGEALTLRWL DQPLYTVTAW TPAGDGAGGS TVSASTTASH 600 SQQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-59 | 211 | 582 | 26 | 380 | Protein SCARECROW |
5b3h_A | 4e-59 | 211 | 582 | 25 | 379 | Protein SCARECROW |
5b3h_D | 4e-59 | 211 | 582 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP001168 | 0.0 | AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02. | |||
GenBank | AP002838 | 0.0 | AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881992.1 | 0.0 | protein DWARF AND LOW-TILLERING-like | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A0E0A4E7 | 0.0 | A0A0E0A4E7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G01600.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-115 | GRAS family protein |
Publications ? help Back to Top | |||
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