PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G24020.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 496aa    MW: 54135 Da    PI: 6.6736
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G24020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM867e-27201573128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 
                      +GfrF+P++ e v +yL ++++g++   + +i   ++y++eP++L  +        ++e+ wyf s+rd+ky++gkr++r+t+  +g+Wk +tg
  OGLUM05G24020.1  20 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFEPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaSTG 113
                      7************************7666779999**********733455532233777********************887679****5566 PP

              NAM  88 k...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k   + ++++  g ++ + ++Lv++kg  ++ +kt+W+m e+++
  OGLUM05G24020.1 114 KtegKDPITECYGGVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 157
                      6444567888799999***********99999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.97418194IPR003441NAC domain
SuperFamilySSF1019414.05E-2919194IPR003441NAC domain
PfamPF023655.1E-1520156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAGLGKGESS GGGGGGGGEM GFRFKPREAE AVEYYLLPRL QGRPPVPNPA IVVENVYEFE  60
PERLINEKCN GGVGGEGEEG WYFLSPRDRK YRNGKRPSRS TEDKAGRWKA STGKTEGKDP  120
ITECYGGVKF CVTSLVYFKG PVKTEKKTKW LMREFTIPHF ENKLDKTAAS ASAAAGSSNK  180
RQLDQYVLCR IYTSPKKGAD DGEQAEVVRG GGGEDIDEWA EACAVFDLGP ETAEGSDNAD  240
AAAAEGDMRS AKQAGKRPVA AAAVAEQPSK RPWLPPSPST PCDGGPSQAM GNRQVPMQGL  300
SLMHNFPPPT TTFCGHAPLQ QGFPVHNNRA QMRWPTMQHN CMPSPAHSFH PRPVQRRPVL  360
VGQAPPQRRP VHHVGGHAPM HMHQAQWMPV HIAQAPMQQL PFDDWVFDPF DDPPPPMQQL  420
PVMMNNYQPQ APMQLPPMMN NDQPAMVHGG ELQAPMQLLP ATTHGGEVQA PMPLNVYEEE  480
QRPSQEDGGQ CTNAEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-162119418168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881431.11e-177pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A0E0A1L50.0A0A0E0A1L5_9ORYZ; Uncharacterized protein
STRINGOGLUM05G24020.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.29e-19NAC domain containing protein 35