![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OGLUM05G21920.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
GRAS |
Protein Properties |
Length: 520aa MW: 54707.9 Da PI: 6.2777 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM05G21920.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Ogu&pid=OGLUM05G21920.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 280.5 | 5.1e-86 | 139 | 510 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
+ lL+ecA a+s g+l+ a+ +L +ls++asp++ + +Rl+ayf++A+aarl++s+ ++++ l+p + + + aa++++++v P+ +++
OGLUM05G21920.1 139 IALLMECAAAMSVGNLAGANGALLELSQMASPYApSCGERLVAYFARAMAARLVGSWVGVAAPLAPPPPPC--AAAINAAFRALYNVAPFARLA 230
689*******************************8889************************998888873..666777999************ PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
+l++NqaIlea++g++ vHi+D+d+ G lQW++Ll aLa+Rp+gpp +R+Tg+g s+ l+ tg++La +A++l ++fef +++ +
OGLUM05G21920.1 231 YLACNQAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVIRVTGFGM----SASVLHDTGNQLAGLARKLCMSFEFYPVAKRPG 320
*************************988447**************************....9**************************877777 PP
GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleakl 275
++ + ++ ++ gEa+aV++ h ++d ++ ++lv+ l+P v++veqe h+++ +Fl+rf++al++ysa+fd++ a+
OGLUM05G21920.1 321 DADAVADMPGRRpGEAVAVHWLR--HAMYDAAGDDGA----AMRLVRWLEPAAVTLVEQERAHGAGgghgRFLDRFVSALHHYSAVFDAMGASR 408
7778888855555********99..778755555555....9******************88855445559*******************9998 PP
GRAS 276 pres.eerikvErellgreivnvvacegaerre.rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdr 365
p + r+ E+ +lgrei nv+a g +r + r++ ++Wre l + GF ++ + a+l+ ++ + gy+v + +g++ lgWk+
OGLUM05G21920.1 409 PDGEdASRHLAEHGVLGREIANVLAVGGPARSNgRERPGGSWREVLARHGFVHAAGGGGGGGRAQLVAGACPgGLGYTVAGDhDGTVRLGWKGT 502
8877689999******************998652777889********************************99******66166666****** PP
GRAS 366 pLvsvSaW 373
pL++vSaW
OGLUM05G21920.1 503 PLYAVSAW 510
******** PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 520 aa
Download sequence Send
to blast |
MQKPYLIDWS LINQLMTGRG SDMQDSLGLM QFHDHHQYLY SSSSSNLPLQ QPLLSHHHRF 60 LEANEGCAGE DDSPEFVEPA AAAAAAGTFE QRPELGACKE VYSEEGGAAE ERTGVAMAGN 120 DVEQVVVEEE EEAHGVRMIA LLMECAAAMS VGNLAGANGA LLELSQMASP YAPSCGERLV 180 AYFARAMAAR LVGSWVGVAA PLAPPPPPCA AAINAAFRAL YNVAPFARLA YLACNQAILE 240 AFHGKRLVHI VDLDVVPGGA LQWLSLLPAL AARPGGPPVI RVTGFGMSAS VLHDTGNQLA 300 GLARKLCMSF EFYPVAKRPG DADAVADMPG RRPGEAVAVH WLRHAMYDAA GDDGAAMRLV 360 RWLEPAAVTL VEQERAHGAG GGHGRFLDRF VSALHHYSAV FDAMGASRPD GEDASRHLAE 420 HGVLGREIAN VLAVGGPARS NGRERPGGSW REVLARHGFV HAAGGGGGGG RAQLVAGACP 480 GGLGYTVAGD HDGTVRLGWK GTPLYAVSAW AWCSPPHARA
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC093952 | 0.0 | AC093952.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1004_E02, complete sequence. |
GenBank | AC118289 | 0.0 | AC118289.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099O15, complete sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |