PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G06980.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 380aa    MW: 39545.9 Da    PI: 5.3326
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G06980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.6e-063977537
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ +e  e++  C  ++  lC+ C   +H        H
  OGLUM05G06980.1 39 LCSACEAAEASVLCCADEAALCARCDRDIHAAnrlagkH 77
                     7******99*********************544555555 PP
2zf-B_box315.1e-10103143337
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++kC+ ++e ++ +fC +++ llC++C ++ H        H
  OGLUM05G06980.1 103 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 143
                      789******99*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1963582IPR000315B-box-type zinc finger
SMARTSM003366.3E-103582IPR000315B-box-type zinc finger
CDDcd000214.52E-53970No hitNo description
SuperFamilySSF578457.32E-598141No hitNo description
SMARTSM003361.4E-15101148IPR000315B-box-type zinc finger
PfamPF006431.4E-8103135IPR000315B-box-type zinc finger
CDDcd000212.17E-9105148No hitNo description
PROSITE profilePS501199.542106148IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSPPPPPYYH HLLLRSSPTT TGGGARVLAA AELARMKLLC SACEAAEASV LCCADEAALC  60
ARCDRDIHAA NRLAGKHLRL PLLSPASSSS SSAAALAPPP PSPPKCDICQ ESHAYFFCLE  120
DRALLCRSCD VAVHTANAFV SAHRRFLLTG VQVGQEQDEH SPDPPEPSPP PPPPPPASKS  180
DHPAPLYGEG GGGFSWDAAD SPAAGGLPDW SAVDDQFGSP PPPRHTDTAT VTTPPPPPPT  240
KRSPRAPAFG GQGGMMDWPL GEFFGGFTDF TGGFGFGFGD SGTSKADSGK LGGSTDGSPY  300
YRSSSEDDRN ADELFGQVPE IQWSVPELSS PPTASGLHWQ RHPAAAVSGG GGGPDTTAFV  360
PDICSPDSCF PATTSKRRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068650.0AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638101.10.0B-box zinc finger protein 22
TrEMBLA0A0D9ZVJ20.0A0A0D9ZVJ2_9ORYZ; Uncharacterized protein
STRINGOGLUM05G06980.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-42light-regulated zinc finger protein 1