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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OGLUM05G02160.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
TALE |
| Protein Properties |
Length: 302aa MW: 32528.4 Da PI: 5.2561 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM05G02160.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28.9 | 1.9e-09 | 235 | 268 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
+yp++e++ +LA+ +gL+ +q+ +WF N+R ++
OGLUM05G02160.1 235 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 268
59*****************************885 PP
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| 2 | ELK | 33.2 | 1.2e-11 | 188 | 209 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK++Ll+KYsg+L+ L++EF+
OGLUM05G02160.1 188 ELKEMLLKKYSGCLSRLRSEFL 209
9********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEDLYSIHPG ISRGGGGGGG GAASEASGVA GGGSSPPHPP PPATTAAAAD LTELMKAQIA 60
GHPSYPSLLS AYIECRKVGA PPEVTTLLEE IGREGRGGGA TAGGEIGLDP ELDEFMETYC 120
RVLERYKEEL TRPFDEAASF LTGIHTQLAS LCGGAPPPTD NSEDEPCSGD ADAADFGQEH 180
SSRLADHELK EMLLKKYSGC LSRLRSEFLK KRKKGKLPKD ARSALMDWWN THYRWPYPTE 240
EDKVRLAAMT GLDPKQINNW FINQRKRHWK PSEDMRFALM EGVTGGSSSG TTLYFDTGTI 300
GP
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 203 | 212 | LRSEFLKKRK |
| 2 | 209 | 213 | KKRKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB028885 | 0.0 | AB028885.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH71, complete cds. |
| GenBank | AF050180 | 0.0 | AF050180.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn2) mRNA, complete cds. |
| GenBank | AK111878 | 0.0 | AK111878.1 Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence. |
| Publications
? help Back to Top |
- Ito Y,Eiguchi M,Kurata N
KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
Genesis, 2001. 30(4): p. 231-8
[PMID:11536429] - Postma-Haarsma AD, et al.
Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
Plant Mol. Biol., 2002. 48(4): p. 423-41
[PMID:11908517] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Kuijt SJ, et al.
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
Plant Mol. Biol., 2004. 55(6): p. 781-96
[PMID:15604716] - Cheng CH, et al.
A fine physical map of the rice chromosome 5.
Mol. Genet. Genomics, 2005. 274(4): p. 337-45
[PMID:16261349] - Chu H, et al.
A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
J. Exp. Bot., 2013. 64(17): p. 5359-69
[PMID:24043854] - Kuijt SJ, et al.
Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
Plant Physiol., 2014. 164(4): p. 1952-66
[PMID:24532604] - Coudert Y, et al.
Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
New Phytol., 2015. 206(1): p. 243-54
[PMID:25442012] - Xu Y, et al.
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
Plant J., 2015. 83(5): p. 806-17
[PMID:26121094] - Kir G, et al.
RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture.
Plant Physiol., 2015. 169(1): p. 826-39
[PMID:26162429]
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