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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G02130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 151aa MW: 16216.2 Da PI: 9.7973 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.3 | 7.8e-14 | 27 | 86 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR+RK++++eeL +++ L+aeN + ++ + e +k++ e+ OGLUM05G02130.1 27 ERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYAGELSKVDGEN 86 46789999*********************************9999999998888877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-17 | 24 | 88 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.4E-11 | 26 | 81 | No hit | No description |
PROSITE profile | PS50217 | 11.3 | 26 | 89 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.19E-10 | 28 | 80 | No hit | No description |
Pfam | PF00170 | 8.6E-10 | 28 | 82 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 31 | 46 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MSSPSRRSSS PESNTSGGGG GGYAADERKR KRMLSNRESA RRSRARKQQR LEELIAEAAR 60 LQAENARVEA QIGAYAGELS KVDGENAVLR ARHGELAGRL QALGGVLEIL QVAGAPVDIP 120 EIPDDPLLRP WQPPFAAQPI VATAMADAFQ F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 47 | RRSRARKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833673 | 0.0 | CT833673.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102G21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639544.1 | 3e-80 | ocs element-binding factor 1 | ||||
Swissprot | P24068 | 2e-35 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | A0A0D3G2U1 | 1e-102 | A0A0D3G2U1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZTR8 | 1e-102 | A0A0D9ZTR8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PS55 | 1e-102 | I1PS55_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM05G02130.1 | 1e-103 | (Oryza glumipatula) | ||||
STRING | ORGLA05G0020300.1 | 1e-103 | (Oryza glaberrima) | ||||
STRING | OBART05G02070.1 | 1e-103 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1886 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 2e-24 | basic region/leucine zipper motif 53 |
Publications ? help Back to Top | |||
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