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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OGLUM04G27880.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
SBP |
| Protein Properties |
Length: 416aa MW: 45008.6 Da PI: 7.8038 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM04G27880.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 128.6 | 2.3e-40 | 184 | 262 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
OGLUM04G27880.1 184 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 262
6******************************98725689*************************************975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MMNVPSAAAA SSCDDFGYNA TPPPPPSLLP IMDQDGGGGS IQRDHHHHHH QQQLGYNLEP 60
SSLALLPPSN AAAAAAHHAT IAHASPHDLL QFYPTSHYLA AAGGAGGGGN PYSHFTAAAA 120
AGSTFQSYYQ QPPQAAPEYY FPTLVSSAEE NMASFAATQL GLNLGYRTYF PPRGGYTYGH 180
HPPRCQAEGC KADLSSAKRY HRRHKVCEHH SKAPVVVTAG GLHQRFCQQC SRFHLLDEFD 240
DAKKSCRKRL ADHNRRRRKS KPSDGEHSGE KRRAQANKSA ATKDKAGSSS KNAGIGDGFE 300
TQLLGGAHMS KDQDQAMDLG EVVKEAVDPK GKASMQQQQQ QAHHGIHQQS HQQHGFPFPS 360
SSGSCLFPQS QGAVSSTDTS NIAQVQEPSL AFHQQHHQHS NILQLGQAMF DLDFDH
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 254 | 272 | RRRRKSKPSDGEHSGEKRR |
| 2 | 255 | 260 | RRRKSK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB776991 | 0.0 | AB776991.1 Oryza sativa Japonica Group LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, cultivar: Nipponbare. |
| GenBank | AK068104 | 0.0 | AK068104.1 Oryza sativa Japonica Group cDNA clone:J013129G14, full insert sequence. |
| GenBank | JX462783 | 0.0 | JX462783.1 Oryza sativa Indica Group cultivar Teqing PAC1 mRNA, complete cds. |
| GenBank | JX462784 | 0.0 | JX462784.1 Oryza rufipogon strain C4 PAC1 mRNA, complete cds. |
