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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OGLUM04G27860.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 139aa MW: 14882.5 Da PI: 4.9109 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM04G27860.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 67 | 3.5e-21 | 2 | 52 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
++ykGVr+++ +g+WvAeIr+p +r++lg++gtae+Aa+a+++a++ + g
OGLUM04G27860.1 2 TKYKGVRQRH-WGSWVAEIRHP-----LlkTRIWLGTYGTAEDAARAYDEAARLMSG 52
69*******9.**********8.....334**********************98766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 139 aa
Download sequence Send
to blast |
MTKYKGVRQR HWGSWVAEIR HPLLKTRIWL GTYGTAEDAA RAYDEAARLM SGPAARTNFP 60 LSSGGGNARS CLSPTLRARL EKCCGAGSSA QAQQGAVAGQ DDNDDAAAAA AMGVDDGDEY 120 VEEMIQELTF YGSIEIVQP
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL606446 | 1e-179 | AL606446.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence. |
GenBank | AL606685 | 1e-179 | AL606685.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence. |
GenBank | AP014960 | 1e-179 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
GenBank | CP012612 | 1e-179 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
GenBank | CR855136 | 1e-179 | CR855136.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147J19, complete sequence. |