PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G26290.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 437aa    MW: 45779.2 Da    PI: 7.3319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G26290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053293661254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYIk L
  OGLUM04G26290.1 329 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 366
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-11327380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-5327370No hitNo description
Gene3DG3DSA:4.10.280.104.1E-8327375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGDHQMMHAA PAAMYNGGGG TTSSHGVWWS NAVGVPAAAT CSTTTELAGD TAWSSALAAG  60
YDGMVADNGG KQAKSTTTAS SESPGNNSSV TFQEPASIPD PAAVAAVPQP GLAGFTDWTQ  120
PFMNNGAGLH EFLQDGHHDM SASSLMNHSS NNLALQQAGH HHELLSSFGS DLLLSPTSPY  180
GGFQSSLLRS LMEPTAKQQQ QQPALAGLQQ YHQYQQQMGH TPAAAAKFAQ AVGARDSLQF  240
TNDAPFWNPS AGFGMPAAVA VAAAAAQDQA SVRSAKRSSP APPRAAATLA LKTAMEGVGD  300
SSSVITKKET AFKKPRLETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHETI  360
EYIKFLHDQV GALSAPYLKN GAHQVPHLKN SSPDKSKHGD ISLKGRGLCL VPISSTFAVA  420
SEVPVELWTP FGANFIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693660.0AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633969.10.0transcription factor bHLH112
TrEMBLA0A0D9ZR730.0A0A0D9ZR73_9ORYZ; Uncharacterized protein
STRINGOGLUM04G26290.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-48bHLH family protein