PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G25460.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 314aa    MW: 33870.8 Da    PI: 6.8002
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G25460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.67.1e-51111541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      lppGfrFhP deelvv+yL +k++g        +    ++ +vd++k+ePw+Lp +++ + +ewyfFs +d+kyatg+r+nrat+sgyWkatgk
  OGLUM04G25460.1  11 LPPGFRFHPMDEELVVDYLYHKLSGGGgggageFYGGVAMVDVDLNKCEPWELPDAARVGATEWYFFSLHDRKYATGQRTNRATRSGYWKATGK 104
                      79**********************9997776543332359**************8888899********************************* PP

              NAM  89 dkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      d++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OGLUM04G25460.1 105 DRAIVTRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 154
                      ******977777777776777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-563187IPR003441NAC domain
PROSITE profilePS5100554.16511187IPR003441NAC domain
PfamPF023653.7E-2612154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSLISMMEAN LPPGFRFHPM DEELVVDYLY HKLSGGGGGG AGEFYGGVAM VDVDLNKCEP  60
WELPDAARVG ATEWYFFSLH DRKYATGQRT NRATRSGYWK ATGKDRAIVT RRRAAAGEAV  120
AGGEVVGMRK TLVFYQGRAP RGSKTEWVMH EFRVDGHAVA DHPSSSTSSS SSNLLKEDWV  180
LCRVFYKSRT ANPRPVVSGE AAVSLSGELS LPPPPPLPVA PAVVDGYTGG GYYEQDSSAG  240
YHHHHHRPPT SAALPFKDLT DFRDLLSNMV QGGGGGAAAA AAAKSEGFHL GWSEEESSGY  300
VQQSAMASQA WNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-46619212170NO APICAL MERISTEM PROTEIN
1ut4_B2e-46619212170NO APICAL MERISTEM PROTEIN
1ut7_A2e-46619212170NO APICAL MERISTEM PROTEIN
1ut7_B2e-46619212170NO APICAL MERISTEM PROTEIN
3swm_A2e-46619215173NAC domain-containing protein 19
3swm_B2e-46619215173NAC domain-containing protein 19
3swm_C2e-46619215173NAC domain-containing protein 19
3swm_D2e-46619215173NAC domain-containing protein 19
3swp_A2e-46619215173NAC domain-containing protein 19
3swp_B2e-46619215173NAC domain-containing protein 19
3swp_C2e-46619215173NAC domain-containing protein 19
3swp_D2e-46619215173NAC domain-containing protein 19
4dul_A2e-46619212170NAC domain-containing protein 19
4dul_B2e-46619212170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376680.0CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-169NAC domain-containing protein 21/22
TrEMBLA0A0D9ZQS50.0A0A0D9ZQS5_9ORYZ; Uncharacterized protein
STRINGOGLUM04G25460.21e-170(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.14e-66NAC family protein