PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G20210.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 747aa MW: 80850 Da PI: 6.7347 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 100.2 | 1.7e-31 | 98 | 182 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f++lea OGLUM04G20210.2 98 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTELEA 182 8*********************************************************************866665..******985 PP | |||||||
2 | trihelix | 107.8 | 7.4e-34 | 490 | 574 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r e++ r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+ OGLUM04G20210.2 490 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 574 8*********************************************************************8.99**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.189 | 91 | 155 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.1E-4 | 95 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 5.24E-30 | 97 | 162 | No hit | No description |
Pfam | PF13837 | 3.4E-22 | 97 | 183 | No hit | No description |
PROSITE profile | PS50090 | 7.805 | 483 | 547 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.3E-6 | 487 | 549 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-4 | 489 | 546 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 6.9E-23 | 489 | 575 | No hit | No description |
CDD | cd12203 | 2.57E-29 | 490 | 554 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MQQHQGGGSQ YGAVPPDMGP FSPTHHASAP APLPLSSRPP PAALSQPPPP QQQQQPRTSY 60 DELAAATSAG AGGFPDDDML GDAGGSGGGG GSGAAGNRWP REETLALIRI RSEMDATFRD 120 ATLKGPLWEE VSRKLAELGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFTEL 180 EALHAAAPQT PQPQQHQQQQ LPPVTSSAPA MHAFAPPVPA PPPMSVMPPP PGPIQPAPIS 240 SAAPAVPLEL PPQPPINLQS LSFSSMSGSE SDDESEDDEM TAETGGSQDR LGKRKRGAGG 300 KRLATFFEGL IKQVVDRQEE MQRRFLETME KREAERTARE EAWRRQEVAR LNREQEQLAQ 360 ERAAAASRDA AIISFLQRIG GQSVQVPPAA TVIQMPTPVQ LQTPPPVKQP ARQHQPQPTP 420 PPPQAAPIPA APLQQQPPQP QHKETIHHEA VTPRSAPPTS GSSLELVPAA EQHVESGLGG 480 GEGGSASSSR WPKTEVQALI QLRMELDMRY QETGPKGPLW EEISSGMRRL GYNRSSKRCK 540 EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDVIYRRK HLTGGGGGGA SAANVAAMAI 600 EHQNPNRHEI EGKNINDNDK RKNGGGGGAQ VPTSNGDTAP TTATFDVDSG MKKLTGNPLA 660 VKPEDIVREL SEQPPREFTT DETDSDDMGD DYTDDGEEGE DDGKMQYRIQ FQRPNPGGAN 720 TAPPPATTPA SAVTTSTPTS TFLAMVQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 148 | KRSAKKCKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X68261 | 0.0 | X68261.1 O.sativa gt-2 gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880668.1 | 0.0 | trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A0D9ZNP4 | 0.0 | A0A0D9ZNP4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G20210.2 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 9e-48 | Trihelix family protein |