PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20120.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 475aa    MW: 50697.9 Da    PI: 6.9706
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.3e-19390424135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  OGLUM04G20120.1 390 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 424
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-18384438IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.018384420IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-14387447No hitNo description
Gene3DG3DSA:3.30.50.102.3E-15388422IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.05E-14389446No hitNo description
PfamPF003203.4E-17390424IPR000679Zinc finger, GATA-type
PROSITE patternPS003440390415IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MLHQTLIPSS TLSFPSSAPL SPPLLFASNA AATAAQGSNT SRSSSAMPSY AHHHSSLGDD  60
EEENGRFLSL CLLGFWNFGN LWFLLCVYVG AFWTEKDGKM DALKSSCRSE EAADEGAAAA  120
PSAWGMVERD GFSVEDLLDL EEFCEAEKDA AEENEQALAV VAAPEEEKSE DDSQPSSVVT  180
YELVAPPPPH PEIVDLPAHD VEELEWVSRI MDDSLSELPP PPQPPASVVA SLAARPPQPR  240
QLQRRPQDGA YRALPPASYP VRTPTICALS TEALVPVKAK RSKRSRATAW SLSGAPPFSD  300
STSSSSTTTT SSCSSSASFS SFSPLLKFEW HPLGGTSDLP DDHLLPPGKK SKHGKNGKNK  360
PKKRGRKPKQ LPPHPSGAAA SASAPGDRRC SHCGVQKTPQ WRAGPEGAKT LCNACGVRYK  420
SGRLLPEYRP ACSPTFVSAI HSNSHRKVLE MRRKKEVGSG LLTAAAAAAP AVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1196110.0AK119611.1 Oryza sativa Japonica Group cDNA clone:002-117-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636682.10.0GATA transcription factor 6
TrEMBLA0A0D9ZNM90.0A0A0D9ZNM9_9ORYZ; Uncharacterized protein
STRINGOGLUM04G20120.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.26e-39GATA transcription factor 5