PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G17960.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 656aa    MW: 67292.4 Da    PI: 6.5076
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G17960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.2e-10279335155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  OGLUM04G17960.1 279 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 335
                      57*******************5444.2455535555.7799999*************98 PP
2AP251.23e-16378429155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  OGLUM04G17960.1 378 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 429
                      89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-8279335IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-14279345IPR016177DNA-binding domain
CDDcd000185.25E-16279345No hitNo description
SMARTSM003809.7E-22280349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-11280345IPR001471AP2/ERF domain
PROSITE profilePS5103217.108280343IPR001471AP2/ERF domain
PRINTSPR003673.3E-6281292IPR001471AP2/ERF domain
PfamPF008471.7E-10378429IPR001471AP2/ERF domain
CDDcd000184.55E-23378439No hitNo description
SuperFamilySSF541712.42E-18378439IPR016177DNA-binding domain
SMARTSM003804.3E-34379443IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-18379438IPR001471AP2/ERF domain
PROSITE profilePS5103219.401379437IPR001471AP2/ERF domain
PRINTSPR003673.3E-6419439IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA  60
PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG GGRRTVAGDG GGEAPKLENF  120
LDGNSFSDVH GQAAGGYLYS GSAVGGAGGY SNGGCGGGTI ELSMIKTWLR SNQSQQQPSP  180
PQHADQGMST DASASSYACS DVLVGSCGGG GGAGGTASSH GQGLALSMST GSVAAAAGGG  240
AVVAAESSSS ENKRVDSPGG AVDGAVPRKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN  300
SCRREGQSRK GRQGGYDKED KAARAYDLAA LKYWGTTTTT NFPMSNYEKE LEEMKHMTRQ  360
EYIAHLRRNS SGFSRGASKY RGVTRHHQHG RWQARIGRVA GNKDIYLGTF STEEEAAEAY  420
DIAAIKFRGL NAVTNFDMSR YDVKSILDSS TLPVGGAARR LKEAEAAAAA AGGGVIVSHL  480
ADGGVGGYYY GCGPTIAFGG GGQQPAPLAV HYPSYGQASG WCKPEQDAVI AAGHCATDLQ  540
HLHLGSGGAA ATHNFFQQPA SSSAVYGNGG GGGGNAFMMP MGAVVAAADH GGQSSAYGGG  600
DESGRLVVGY DGVVDPYAAM RSAYELSQGS SSSSVSVAKA ANGYPDNWSS PFNGMG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877260.0AK287726.1 Oryza sativa Japonica Group cDNA, clone: J065138E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635553.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-131BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0D9ZMU90.0A0A0D9ZMU9_9ORYZ; Uncharacterized protein
STRINGOGLUM04G17960.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-115AP2 family protein