PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G15860.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 269aa    MW: 29417.6 Da    PI: 4.0725
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G15860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.67.9e-13131551128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                      lp G+rF+P+d +++ +yL + + +      +  +v++ vd++ + P  +p       +  +e + yfF  + +     + + r +  g W   
  OGLUM04G15860.1  13 LPWGYRFRPSDRQIIANYLGPMAIHGAdslPQRGDVVEGVDVFATRPAAIPFeprrhVFGLDEVRAYFFGDQPTD----S-RGREVPGGAWLPC 101
                      689****************99976665475455578**************9536553333355578999987554....3.4577899****99 PP

              NAM  87 gkdkevlsk...kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                      g   + +s    +ge+v  ++   f           ++a ++ + +W m+eyrl
  OGLUM04G15860.1 102 GGGDKAYSGgadGGEAVAYRRKYEFRaadeeadraGEEAATPARPRWRMKEYRL 155
                      9988888877778888*********97777665532467777899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-224184IPR003441NAC domain
PROSITE profilePS5100522.89113185IPR003441NAC domain
PfamPF023655.7E-1014155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MASSAHMAAV LNLPWGYRFR PSDRQIIANY LGPMAIHGAD SLPQRGDVVE GVDVFATRPA  60
AIPFEPRRHV FGLDEVRAYF FGDQPTDSRG REVPGGAWLP CGGGDKAYSG GADGGEAVAY  120
RRKYEFRAAD EEADRAGEEA ATPARPRWRM KEYRLNKSAA AFRRAYAQPN PKANMDCVVR  180
EIYTKAVPPP TPPSGRSGDE EMQEGSDYSG FEDGNFDEDQ DQPAAAEDGD YSDEDEDQPA  240
AAEDGDYSDE DQDQPAAAED GDYSDEDEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315820.0AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634860.10.0NAC domain-containing protein 67-like
TrEMBLA0A0D9ZM340.0A0A0D9ZM34_9ORYZ; Uncharacterized protein
STRINGOGLUM04G15860.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.17e-09NAC domain containing protein 95