PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G13780.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 417aa    MW: 43986.3 Da    PI: 6.8105
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G13780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.63.3e-1368149286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ +++g+ +   s +qCk++++ l+k+yk +++   +       ++++f +l+
  OGLUM04G13780.1  68 WSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWQFFGRLD 149
                      *************************************87888866222667**************99988876.......488888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2266151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDDDDAAASA SPSPSPSPVA SALPVADPVT VAAGPPSGLL ALALPIQKQQ HAASPNPGGG  60
GGGREDAWSE GATAALIDAW GERFVALGRG SLRHPQWQEV ADAVSSREGY AKAPKSDVQC  120
KNRIDTLKKK YKIERAKPAS SWQFFGRLDD LLAPTFNQKP SGNGGGGVGA SVNGRNPVPA  180
ALRVGFPQRS RTPLMPAPVS AVKRRALSPE PSASSESSDG FPPEREPAFP PLPLPPPPNG  240
KRSRADEGRG GGAGGGGDRA QGLRELAQAI RRFGEAYERV ETAKLEQSAE MERRRLDFAS  300
ELESQRVQFF LNTQMELSQV KNHSSSPANA AAPPGATGGA GGTSRRMASV NDASASGNYH  360
RRYRVSDGGR HRHHPQPPPS RPHYQYHENN IAVAAAAAAS DGEQSDDEED DDEEESQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315930.0AL731593.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8551820.0CR855182.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0140O07, complete sequence.
GenBankCT8379700.0CT837970.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633896.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG84e-38ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D9ZLB60.0A0A0D9ZLB6_9ORYZ; Uncharacterized protein
STRINGOGLUM04G13780.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.14e-38sequence-specific DNA binding transcription factors