PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G13590.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 850aa MW: 93821.1 Da PI: 6.9041

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G13590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	6.6e-52	10	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yLkkkv +k++l evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk OGLUM04G13590.1 10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKC 102 69**************************.99**********963433332566******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + + +++g++ktLvfy+grap+g+ktdW+mheyrle OGLUM04G13590.1 103 IRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139 9.8999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-59	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	58	10	161	IPR003441	NAC domain
Pfam	PF02365	8.3E-27	11	138	IPR003441	NAC domain
Pfam	PF08583	5.8E-8	377	428	IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like
Gene3D	G3DSA:3.20.20.70	4.0E-126	473	842	IPR013785	Aldolase-type TIM barrel
CDD	cd02933	3.94E-166	479	820	No hit	No description
SuperFamily	SSF51395	8.18E-108	479	839	No hit	No description
Pfam	PF00724	7.3E-77	480	816	IPR001155	NADH:flavin oxidoreductase/NADH oxidase, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0010181	Molecular Function	FMN binding
GO:0016491	Molecular Function	oxidoreductase activity

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWELQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKTD WIMHEYRLED ADDSQSASSE DGWVVCRVFK KKCFFKIGGG GGGEGSGGSQ 180 GGDVGGGHLA VSPPLGGGHA MAAASHYMHP HHQYHHHHHH AAAASPFYYT QMPPPAAAAP 240 PHAAYSHHVQ VQDLLTNHRP SADAGYDFSG LPAVDHHHHH PGLDVGSSDG GGGVAAGGAD 300 GDQAAAAAAG STDQQQWQAM DGFSNGGAGA AAAVQQQLGA MSSGQRGGEM DLWGYGRLTF 360 YIFGNASPSN LTQASYIIEA FQKCHVDHPV KKFFGECTDL KIKLDQCFRQ EKALKRKANF 420 EESKKFKEHT VGSPIADIDC KSCSRNKDNY VICPFKFQVN QDTRTSRGAG EREKMDPVPL 480 FNPCEMGRFT FSHRIVLAPL TRARSYGNLP QSHAILYYSQ RATKGGLLIS EATGVSSDAP 540 CTNTPGIWTK EQVEAWKPVV DAVHAKGGIF FCQIWHVGRA SDLEQEPISS TDKPVEKNED 600 MDFPVPRRLA VEEIPDVINH FRIAARNAID AGFDGVEVHG AHGFLLEQFM KDGVNDRADE 660 YGGSLQNRCR FALEVIDAVS TEVGPDRVGF RISPYISYYG CHDSDPDALG VYMARELDRR 720 GVLYCSAVEP EMVAATTVVD GETTTTTMSR RMMIPHRLHG MREAFRRGMF MVGGGYDRDA 780 GNMAVASGYA DMVVFGRLFL ANPDLPRRFQ LDAPLNKYDR ATFYTHDPVV GYTDYPFLDD 840 DREAMSDHTG

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWELQERCR  60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR  120
GRAPHGQKTD WIMHEYRLED ADDSQSASSE DGWVVCRVFK KKCFFKIGGG GGGEGSGGSQ  180
GGDVGGGHLA VSPPLGGGHA MAAASHYMHP HHQYHHHHHH AAAASPFYYT QMPPPAAAAP  240
PHAAYSHHVQ VQDLLTNHRP SADAGYDFSG LPAVDHHHHH PGLDVGSSDG GGGVAAGGAD  300
GDQAAAAAAG STDQQQWQAM DGFSNGGAGA AAAVQQQLGA MSSGQRGGEM DLWGYGRLTF  360
YIFGNASPSN LTQASYIIEA FQKCHVDHPV KKFFGECTDL KIKLDQCFRQ EKALKRKANF  420
EESKKFKEHT VGSPIADIDC KSCSRNKDNY VICPFKFQVN QDTRTSRGAG EREKMDPVPL  480
FNPCEMGRFT FSHRIVLAPL TRARSYGNLP QSHAILYYSQ RATKGGLLIS EATGVSSDAP  540
CTNTPGIWTK EQVEAWKPVV DAVHAKGGIF FCQIWHVGRA SDLEQEPISS TDKPVEKNED  600
MDFPVPRRLA VEEIPDVINH FRIAARNAID AGFDGVEVHG AHGFLLEQFM KDGVNDRADE  660
YGGSLQNRCR FALEVIDAVS TEVGPDRVGF RISPYISYYG CHDSDPDALG VYMARELDRR  720
GVLYCSAVEP EMVAATTVVD GETTTTTMSR RMMIPHRLHG MREAFRRGMF MVGGGYDRDA  780
GNMAVASGYA DMVVFGRLFL ANPDLPRRFQ LDAPLNKYDR ATFYTHDPVV GYTDYPFLDD  840
DREAMSDHTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1vji_A	1e-156	473	839	5	369	12-oxophytodienoate reductase (OPR1)
2q3r_A	1e-156	473	839	5	369	12-oxophytodienoate reductase 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067218	0.0	AK067218.1 Oryza sativa Japonica Group cDNA clone:J013098J23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9ZL91	0.0	A0A0D9ZL91_9ORYZ; Uncharacterized protein
STRING	OGLUM04G13590.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP197	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	8e-76	NAC domain containing protein 70