PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G12700.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 506aa    MW: 52695 Da    PI: 8.4218
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G12700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS245.22.6e-75914971374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+lLl+++ a ++gd++ a a+L ++  +as +g  dp qR+aa+++ ALa rla    +l  a ++ +++    +e++ a+++f+++sP+++
  OGLUM04G12700.1  91 LVRLLLSAVAAGEAGDARTAAAALREVDRRASCRGggDPAQRVAACYAAALAPRLAA---GLRPARSSPAAPAAARAEQFLAYTMFYQASPFYQ 181
                      6899**************************99998789******************9...44444444444444589999************** PP

             GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg...................ppslRiTgvgspesgskeeleetgerL 165
                      f+h+taNqaI+ea+e+   +r+H++Dfd+s+G+QWp+L+q+L++ ++                    p slRiTg+g+    s++el+et+ rL
  OGLUM04G12700.1 182 FAHFTANQAIVEAFESGgrRRLHVVDFDVSYGFQWPSLIQSLSDAAAAatsssshddddngggcgdgPVSLRITGFGA----SADELRETEARL 271
                      **************9876699*********************988744455677888888999999788*********....9*********** PP

             GRAS 166 akfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnse.. 251
                      ++fA+ + +++fef+  + ++ ++ + +  r++ + +++Vnlv+   +     ++      + +  ++sl+P +v ++e+      +    +  
  OGLUM04G12700.1 272 RRFAAGCpNLRFEFEG-ILNNGSNTRHDCTRIDDDATVVVNLVFPASSRE---AC----AATRMAYINSLNPSMVFLIEKHdggggL----Tgg 353
                      ***998769*******.6999***********************655553...22....234699**************97555431....133 PP

             GRAS 252 .........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle.......kWrerleeaGFkpvpl 329
                               s+l rf+  l+y++a+fdsl++ lp++s er  +Er  lgrei ++va    ++r rh   +       +W++++e aG+  v+l
  OGLUM04G12700.1 354 dntttgrsaSLLPRFAANLRYFAAVFDSLHECLPADSAERLAIERDHLGREIADAVASLDHQHRRRHGGGGdhaaaswNWKAAMEGAGLDGVKL 447
                      455566777*************************************************9999999997543222222379************** PP

             GRAS 330 sekaakqaklllrkvk...sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                      s+++++qaklll++ +   + g+rv e +g +   l W+d +L ++++Wr
  OGLUM04G12700.1 448 SSRTVSQAKLLLKMKSgcgGGGFRVVEGDGGMAmsLAWRDMALATATVWR 497
                      ************9977422455***9998877668**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.71665472IPR005202Transcription factor GRAS
PfamPF035149.2E-7391497IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MNLTLSLAID GGGGGGAAAA AAAAAVAKKS KVVGGGAVVV DGVGSSAICG GDRGSRVRDR  60
MVKKAEEFDH ENGMAATSSD GGGGGGGGME LVRLLLSAVA AGEAGDARTA AAALREVDRR  120
ASCRGGGDPA QRVAACYAAA LAPRLAAGLR PARSSPAAPA AARAEQFLAY TMFYQASPFY  180
QFAHFTANQA IVEAFESGGR RRLHVVDFDV SYGFQWPSLI QSLSDAAAAA TSSSSHDDDD  240
NGGGCGDGPV SLRITGFGAS ADELRETEAR LRRFAAGCPN LRFEFEGILN NGSNTRHDCT  300
RIDDDATVVV NLVFPASSRE ACAATRMAYI NSLNPSMVFL IEKHDGGGGL TGGDNTTTGR  360
SASLLPRFAA NLRYFAAVFD SLHECLPADS AERLAIERDH LGREIADAVA SLDHQHRRRH  420
GGGGDHAAAS WNWKAAMEGA GLDGVKLSSR TVSQAKLLLK MKSGCGGGGF RVVEGDGGMA  480
MSLAWRDMAL ATATVWRRRR RRRRCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3410449932381Protein SCARECROW
5b3h_A2e-3410449931380Protein SCARECROW
5b3h_D2e-3410449931380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1496503RRRRRRRR
2497503RRRRRRR
3498505RRRRRRCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064580.0AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634839.10.0protein MONOCULM 1
TrEMBLA0A0D9ZKX80.0A0A0D9ZKX8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G12700.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.19e-31GRAS family protein