PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G12510.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 695aa MW: 74143.8 Da PI: 5.4664

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G12510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	5e-14	133	181	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h Er RR++++++fe L +l+P++ +K +Ka+i+e +++YIk+Lq OGLUM04G12510.1 133 KMHVLTERERRKEMKNKFEILHTLIPNL----PEKTDKATIVEATINYIKNLQ 181 579999*******************6....39****************9 PP
2	HLH	34.3	4.3e-11	496	539	8	55
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f++L llPk + +K +Ka+i+ +A+ YIk L+ OGLUM04G12510.1 496 TERERRKKMKNMFSTLHGLLPKiP-----GKTDKASIVGEAIGYIKTLE 539 7*******************88.....9**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.053	130	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-15	133	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.26E-14	133	185	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-16	134	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-11	134	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-11	136	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.884	488	538	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.07E-14	492	549	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-13	493	549	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.60E-11	493	543	No hit	No description
SMART	SM00353	1.8E-7	496	544	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-8	496	539	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MSQEGPNNHP QGTQETHDCP FTIATNTPLG STKMGYSDSR KSDENNTSSK PASPVVSSDV 60 VEIKETWENV VVADEEGEGG EDGFASDASE SKSKSSSDEV DYELLDLLAG ASEGCSGGNN 120 NDEVKNFAYA DHKMHVLTER ERRKEMKNKF EILHTLIPNL PEKTDKATIV EATINYIKNL 180 QDKIHKMEML KVEREHAIAL AAAATATAAA SADTALQAPP PSEEENEEEH DSVVAAATRE 240 MALADMVHAW EQQQEAAATG GSHGGHAVPP PPPAASLQTW TGPNMTASLT GDDGFITLSL 300 PHQGGQKNLV AGAVSVLERH HIDVVTATVS ASEQGDNLIS LHCHLSPGSS SSQNLTPLDK 360 FKLAMSELML WSQYLHLPIH PMSQEGADLS QDVDESPYHT AVVTTNNLVR SIKAEKSNSS 420 SSSGKPVETD IGLKVASPTM FGFNTKIEGT GKNMAVKREE GEGGGRPSVS SGVNTRDTNG 480 KGKNAMDMEH ALHIWTERER RKKMKNMFST LHGLLPKIPG KTDKASIVGE AIGYIKTLED 540 VVQKLETIKT ERVRAHQWAA AAAAAVAANG GGEGSSHSHS QPPRHATAVT VAVAEPAPVA 600 AAVNAQAPQK KAAAAAAPTL QTWSAPNITL TMAGVDAFIN MCLPRQRASF TTVAFVLEKH 660 QIDVLNEASL QSTEGLTPEA KYKLAVSELM VRLAE

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MSQEGPNNHP QGTQETHDCP FTIATNTPLG STKMGYSDSR KSDENNTSSK PASPVVSSDV  60
VEIKETWENV VVADEEGEGG EDGFASDASE SKSKSSSDEV DYELLDLLAG ASEGCSGGNN  120
NDEVKNFAYA DHKMHVLTER ERRKEMKNKF EILHTLIPNL PEKTDKATIV EATINYIKNL  180
QDKIHKMEML KVEREHAIAL AAAATATAAA SADTALQAPP PSEEENEEEH DSVVAAATRE  240
MALADMVHAW EQQQEAAATG GSHGGHAVPP PPPAASLQTW TGPNMTASLT GDDGFITLSL  300
PHQGGQKNLV AGAVSVLERH HIDVVTATVS ASEQGDNLIS LHCHLSPGSS SSQNLTPLDK  360
FKLAMSELML WSQYLHLPIH PMSQEGADLS QDVDESPYHT AVVTTNNLVR SIKAEKSNSS  420
SSSGKPVETD IGLKVASPTM FGFNTKIEGT GKNMAVKREE GEGGGRPSVS SGVNTRDTNG  480
KGKNAMDMEH ALHIWTERER RKKMKNMFST LHGLLPKIPG KTDKASIVGE AIGYIKTLED  540
VVQKLETIKT ERVRAHQWAA AAAAAVAANG GGEGSSHSHS QPPRHATAVT VAVAEPAPVA  600
AAVNAQAPQK KAAAAAAPTL QTWSAPNITL TMAGVDAFIN MCLPRQRASF TTVAFVLEKH  660
QIDVLNEASL QSTEGLTPEA KYKLAVSELM VRLAE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107268	0.0	AK107268.1 Oryza sativa Japonica Group cDNA clone:002-125-H08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636599.1	1e-178	transcription factor bHLH95
TrEMBL	A0A0D9ZKV3	0.0	A0A0D9ZKV3_9ORYZ; Uncharacterized protein
STRING	OGLUM04G12510.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	2e-21	bHLH family protein