PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OGLUM04G09140.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 188aa MW: 20817 Da PI: 10.0339

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G09140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	77.1	2.4e-24	10	56	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y++C++NhAa+lG++a DGC+E++p+ ++l CaACgCHRnFHR++ OGLUM04G09140.1 10 EVYRKCMRNHAAKLGTYANDGCCEYTPN-------DGLLCAACGCHRNFHRKDF 56 68***********************8.......79*************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.0E-18	11	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-17	12	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-17	12	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.771	12	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	7.3E-8	118	153	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEQQQERPQE VYRKCMRNHA AKLGTYANDG CCEYTPNDGL LCAACGCHRN FHRKDFLDGR 60 ATAATVSAGV PGRLRMHQCC RPPVEAGCRD TCTWRRWVAE SLTAAAGTAR LRREAADAQT 120 KFTKEQKARM LRFAERLGWR IAGARQRTQG RRCGAFLLPP APAATSILLP PPPLPPDLAD 180 GRALMPGR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630147.1	9e-41	zinc-finger homeodomain protein 11
Swissprot	A2XLF4	8e-42	ZHD11_ORYSI; Zinc-finger homeodomain protein 11
Swissprot	Q10DV5	8e-42	ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBL	A0A0D9ZJL7	1e-134	A0A0D9ZJL7_9ORYZ; Uncharacterized protein
STRING	OGLUM04G09140.1	1e-135	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9204	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-22	homeobox protein 22