PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G40290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 26084.8 Da PI: 5.4034 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.5 | 4e-17 | 8 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l pG+ F+P+d+ l++ +L++k+++ ++e + i+++d+y+++P +L ++ ++ s+ k++a+g+r++ + +++Wk+ g +k+v OGLUM03G40290.1 8 LEPGYAFRPSDDGLITLFLRPKIAKIPFEH-RLINHTDVYSADPAELVGEH-RPAPGTHGSSSVCKRKASGRRQRAVGGESVWKSEGGKKAVNG 99 579************************999.89**************7332.223466777777777778888888889*************** PP NAM 95 kkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 ++g+ vg + + + +g+a++ ++ W+m ey l OGLUM03G40290.1 100 ADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 139 ********99999966677766889999999*******76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-28 | 6 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.934 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-9 | 10 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDDDEIALEP GYAFRPSDDG LITLFLRPKI AKIPFEHRLI NHTDVYSADP AELVGEHRPA 60 PGTHGSSSVC KRKASGRRQR AVGGESVWKS EGGKKAVNGA DGRRVGYLQK FSYGVYESSS 120 SGSARTFTRL GWCMTEYGLD DDATDGADKH VLCKVYRSPR AVCAEARTAA AKCSGYKRKA 180 DDGEDHPEAA PPSARPRQEE AGSEHDEQPE LDLDALLSAP TDENLESTFS TAATAVALAL 240 VV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629679.1 | 1e-144 | NAC transcription factor NAM-2 | ||||
TrEMBL | A0A0D9ZFL5 | 1e-177 | A0A0D9ZFL5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G40290.1 | 1e-178 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 4e-13 | NAC family protein |