PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G40250.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1722aa    MW: 190842 Da    PI: 5.8944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G40250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.6e-0815721613144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                       r +W++ E ++++++ +q+G++ ++ I + ++  ++++q++ ++
  OGLUM03G40250.1 1572 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 1613
                       569*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.917939IPR002885Pentatricopeptide repeat
PfamPF015350.0561439IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.3424074IPR002885Pentatricopeptide repeat
PfamPF015350.084265IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.68675109IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.881110140IPR002885Pentatricopeptide repeat
PfamPF015350.0078115140IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.7E-8118158IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.523141175IPR002885Pentatricopeptide repeat
PfamPF015350.028144172IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.985176211IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.607212242IPR002885Pentatricopeptide repeat
PfamPF015350.023217239IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.912243283IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.16319349IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.583350384IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.2E-4353377IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.7E-8353384IPR011990Tetratricopeptide-like helical domain
PfamPF015357.6E-4353377IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.415385419IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.512451485IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.7E-8452482IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007560.0024453486IPR002885Pentatricopeptide repeat
PfamPF015356.5E-6453483IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.777486521IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.7E-8552609IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.744554584IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.487588622IPR002885Pentatricopeptide repeat
SuperFamilySSF466899.72E-1015631619IPR009057Homeodomain-like
PfamPF159638.6E-2515651646No hitNo description
SMARTSM007177.5E-915711619IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-515721614IPR009057Homeodomain-like
CDDcd001672.75E-615741614No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1722 aa     Download sequence    Send to blast
MLRAAYRPGL FLRNNLLALY CRCGDMWHAR LLFDGMPRRD AVSWNTLIAG YSGLGSPRLA  60
LDAFRGARAS GDGVDRFTFA AALASCAREG NWRNGRVVHG LAVVSGLART AFLTNSVIDM  120
YAKCGMIDEV RLLFDRAEER DEASWNLLLS AYVRMGWPEV AVNVLVWMHR SGVKLDSFAL  180
GGILKACSEL GDSEDVRRML HGCVVKVGLD LDVFVGSAMV DMYAKNGGLE EAIKVFDCIP  240
NQNVVVYNAM IAGFARLGND PCPEIRIEAV MLFSNMLKKR IKPSKFTFKS VLEVCNLTNA  300
VRCGRQIHAH VILSGLQADE FIASVLINLY SKARSVNDSL RCFDMTLKED VFIWTSMITA  360
FVQNEHFEKA LYLFRELLYT RKETDQFTIS SVMSACAALS VPTTCKQIHC HAVKTGLDQF  420
TVSGNSQIAM YRNIGDLKAS KLTFEQISCL DTFSWSAMIL SYAVHGYESK ALELFEKMKN  480
LGVMMNEIAS LAVLIACSHQ GLADEGLRYY ENTIPDDGFS LDVKLKACMV DLLGRVGKIA  540
DAEDFIMSSG SENDPILWHA LLRACRVHGD KERCTKIGEK LMELEPFSAS SYVMLYNLYM  600
DAGKISLAMR TRGLMRERGI TNEAGISWTD FGGSIHNFID GDNSCSHNTI HTTLEELLVR  660
VKQKTEHGGT NIWELEFQSR KLSESSISRH GELLAVAFGL TTLPSVAPVR VMKNQRISWE  720
SHETLKLLSE ALIPGRLLPF RLPPLPLPPS PTRSIGKSNA SIAFLFFSSR SPPQTPPIPY  780
PPHTLSVAPP QPPPHPLQRR RSTGLPSIDG VTPRDGWRRR GRADAPRRRS PVGAVAASLH  840
RRPDESLAPP PIPGLLDPAC EQVRNGLFGN PKICRLGSSS PCAVSRLNRG GGKQSRGGEG  900
ILQLNPHVPS WIRPCLKGVD KLDESSGDTG HIAMIDDEAD FGNITDATEG QAAAKFHGNA  960
CASGGILDTP SEDVVTVSLG LVNNPDVALD SSTVFASVHK VSQNEENNDD LSHVATHKES  1020
MVVSDTQAPP TCCSAKTIDD LADFEGLCDD THVEEERVAK FQPKFRVKTS KAASKSQRTN  1080
QKAGVSTVDV VSQNKEDGKD QAGCNDKQLH SPTRHQESVQ ISYSQAHLGT HNSTIDDVAN  1140
SDSIMEEPAQ EEMAAKFQPR LRPKAGGASP GVAETIDAAC VATPEFGVSS ADVVSQDTEE  1200
DSHREGLSDG SCQKYIDEEA ITTSGTGPPQ DLDATVDLDS HAEMVNPHPD GSPLIIGEPS  1260
AETTVKFQPY VRRKKGKGKS VSFVPPNVSH AHTPTDTNSE TSNSSHFCKD IATGESLSNL  1320
PQQASEKICI SGEHHPDDQE CNDPENQYHE GEPYDHVIEQ EPERDVRETG TPMILRNRGK  1380
LQKDGIPEHT ADDIMDEDFG EPPSDEQDND SGDEYTARGK QKGRRKSREK NINKEPSRGT  1440
KRTSGDSTIE ESQKQKLQKN KSKTSSRGQK KTSKDSSVEQ PEKKLTHRIR RKRMEEVKTL  1500
LETPDHEIDR MKLSGKEIPS GPSSSNHSTS QFGDMDDEYN EQDNWDNDRT ENHVVENTTK  1560
LNYHSYMNRQ TRAKWSKSET DKFYEGLQQF GSDFAMIQHL FPDKSRNQVR QKFKAEEKKH  1620
PMQVHDAIMH RSRDNLYFKE VIKKLNIEDV QPDINNTHEQ EGTSNEEDPG NKNIPGGLIN  1680
EEENGLDWSD KELDMHRSEV EEKEHVSTND DDDDLGDVFD WY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-64156617337PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0968560.0AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9ZFK70.0A0A0D9ZFK7_9ORYZ; Uncharacterized protein
STRINGOGLUM03G40250.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.22e-32MYB_related family protein