PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G40060.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 212aa    MW: 22867.6 Da    PI: 6.4192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G40060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-09129174247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+W++eE+ + ++++++ G g+W+ I+ +    Rt+ q+ s+ qky
  OGLUM03G40060.1 129 GPWSEEEHRQCLRGIEEIGHGRWTQISIEYVPSRTPIQIASHSQKY 174
                      89*************************98888************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.5641774IPR017877Myb-like domain
SMARTSM00717112176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-42478IPR009057Homeodomain-like
PROSITE profilePS5129412.427123179IPR017930Myb domain
SuperFamilySSF466894.93E-14124180IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-10126177IPR006447Myb domain, plants
SMARTSM007173.6E-6127177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-10129170IPR009057Homeodomain-like
PfamPF002493.1E-8129174IPR001005SANT/Myb domain
CDDcd001675.04E-7130170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGDLVGDGAA PAAAEPAPAA AACRWTRQKD KLLETLVARC AMNRQCVGGW DAIAAAFGDD  60
TTAAQVEQRY GEIAAEVRRV MEEPWDAEDP AIAAAAAAVP AAPVKHAAAG PGSDGGGEEG  120
KVVVEKKSGP WSEEEHRQCL RGIEEIGHGR WTQISIEYVP SRTPIQIASH SQKYFLRMAK  180
PKEDRKRKSI HDTPYHLHLP NAADAHAHQQ QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044870.0AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629677.11e-151transcription factor MYBS1-like
TrEMBLA0A0D9ZFH91e-152A0A0D9ZFH9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G40060.11e-153(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1818388
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-18MYB family protein