PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G39510.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 318aa    MW: 34245.9 Da    PI: 4.4044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G39510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.43.4e-2081531128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk.....sg 81 
                      l pG+ FhP+d+ l++ +L++++++ ++e  + i+++d+y+++P +L         ++++++ wyfF++ + +++  t+ r++ra+      ++
  OGLUM03G39510.1   8 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVGgggggES 100
                      579************************998.88**************7335666655557779*****98755441155677776544444477 PP

              NAM  82 yWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      +Wk+ g +k+v+ ++g+ vg  + + +       +g+a++ ++  W+m ey l
  OGLUM03G39510.1 101 VWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 153
                      8********************99999966677766889999999*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-335172IPR003441NAC domain
PROSITE profilePS5100529.1938172IPR003441NAC domain
PfamPF023653.9E-1210152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAEDEIALEP GYVFHPSDDG LITLFLRPSI AKIPFEDRLI NHADVYSADP AELVGEHRPA  60
PGTHGSSSVW YFFCSPRFTS KRKTSGRRQR AVGGGGGGES VWKSEGGKKA VIGADGRRVG  120
YLQKFSYGVY ESSSSGSART FTRLGWCMTE YGLDDDAIDG ADKQVLCKVY RSPRAVCAEA  180
RTAAAAKSAD SPCSGSKRKA DDGADHPEAP PSAWPRQEEA GSEHGEQPAI LPELDLDALL  240
SAPMDDSLGV EFDTATTEQY MRYLMNDEPL PWAPTMEVAG GGDEFIETTN GPCMGEEEII  300
QRLAAGETLD DILGTNPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-13517217168NAC domain-containing protein 19
3swm_B6e-13517217168NAC domain-containing protein 19
3swm_C6e-13517217168NAC domain-containing protein 19
3swm_D6e-13517217168NAC domain-containing protein 19
3swp_A6e-13517217168NAC domain-containing protein 19
3swp_B6e-13517217168NAC domain-containing protein 19
3swp_C6e-13517217168NAC domain-containing protein 19
3swp_D6e-13517217168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.10.0NAC domain-containing protein 71-like
RefseqXP_015629670.10.0NAC domain-containing protein 71-like
TrEMBLA0A0D9ZF840.0A0A0D9ZF84_9ORYZ; Uncharacterized protein
STRINGOGLUM03G39450.10.0(Oryza glumipatula)
STRINGOGLUM03G39510.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-09NAC family protein