PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G39450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 34245.9 Da PI: 4.4044 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.4 | 3.4e-20 | 8 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk.....sg 81 l pG+ FhP+d+ l++ +L++++++ ++e + i+++d+y+++P +L ++++++ wyfF++ + +++ t+ r++ra+ ++ OGLUM03G39450.1 8 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVGgggggES 100 579************************998.88**************7335666655557779*****98755441155677776544444477 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 +Wk+ g +k+v+ ++g+ vg + + + +g+a++ ++ W+m ey l OGLUM03G39450.1 101 VWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 153 8********************99999966677766889999999*******76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-33 | 5 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.193 | 8 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-12 | 10 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAEDEIALEP GYVFHPSDDG LITLFLRPSI AKIPFEDRLI NHADVYSADP AELVGEHRPA 60 PGTHGSSSVW YFFCSPRFTS KRKTSGRRQR AVGGGGGGES VWKSEGGKKA VIGADGRRVG 120 YLQKFSYGVY ESSSSGSART FTRLGWCMTE YGLDDDAIDG ADKQVLCKVY RSPRAVCAEA 180 RTAAAAKSAD SPCSGSKRKA DDGADHPEAP PSAWPRQEEA GSEHGEQPAI LPELDLDALL 240 SAPMDDSLGV EFDTATTEQY MRYLMNDEPL PWAPTMEVAG GGDEFIETTN GPCMGEEEII 300 QRLAAGETLD DILGTNPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-13 | 5 | 172 | 17 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-13 | 5 | 172 | 17 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-13 | 5 | 172 | 17 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-13 | 5 | 172 | 17 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-13 | 5 | 172 | 17 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-13 | 5 | 172 | 17 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-13 | 5 | 172 | 17 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-13 | 5 | 172 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629669.1 | 0.0 | NAC domain-containing protein 71-like | ||||
Refseq | XP_015629670.1 | 0.0 | NAC domain-containing protein 71-like | ||||
TrEMBL | A0A0D9ZF84 | 0.0 | A0A0D9ZF84_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G39450.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OGLUM03G39510.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-09 | NAC family protein |