PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G36280.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 337aa    MW: 34054.4 Da    PI: 6.9661
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G36280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1159.8e-36461575105
              TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaesssssasn 84 
                      +drhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++                  ++  + ++s++++++
  OGLUM03G36280.1  46 RDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaaA----ADAapTRQRSQQQQQQ 135
                      8************************************************************8888876643321....2223323333333333 PP

              TCP  85 sssgkaaksaa.kskksqksaa 105
                       s+++ ++s+  +sk s+k+ +
  OGLUM03G36280.1 136 LSNKSGCSSTSeTSKGSDKEVT 157
                      3333333333323333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.00445103IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-3446153IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRDRHS KVYTAKGIRD  60
RRVRLSVATA IQFYDLQDRL GFDQPSKAIE WLINAASPAI DTLPSLDPAA FAAIPHAAAA  120
DAAPTRQRSQ QQQQQLSNKS GCSSTSETSK GSDKEVTVAS APAQAASFTE LLIAGVAASS  180
AGGGAIGNGA DCVGIAHPGK GGAEGASTYG FSAASSFGDA PPIGMVPAPP FNFSAPGADM  240
AAHYSLAQDQ LAAPPPPAGG DYNLNFSMSS GFLGANRGTL QSNSPSNMSG HHHHHHQQQL  300
QRLDGSTISF LLGHAAAAAH PAASEGQITS TAALQLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2650104155Putative transcription factor PCF6
5zkt_B6e-2650104155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629084.11e-176transcription factor PCF6
SwissprotQ10CE81e-177PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A0D9ZE280.0A0A0D9ZE28_9ORYZ; Uncharacterized protein
STRINGORUFI03G38070.11e-177(Oryza rufipogon)
STRINGORGLA03G0335700.11e-177(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-30TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2