![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM03G32210.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 357aa MW: 37975.8 Da PI: 5.7583 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 178 | 225 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq OGLUM03G32210.2 178 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 225 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-10 | 178 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-18 | 178 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 178 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.43E-13 | 180 | 229 | No hit | No description |
SMART | SM00353 | 6.1E-15 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEADAAAAA AAMVQQQQYA 60 AAAAEHRPRK AAKVNTSWDS CITEQGSPAD SSSPTILSFG GHADAAAAAA FASAGQAQSA 120 PYYGGASAAA LKPKQELDAA AAPFSQARPV KRSYDAMVAA DVAKAPAAAA SRPASQNQEH 180 ILAERKRREK LSQRFIALSK IVPGLKKMDK ASVLGDAIKY VKQLQDQVKG LEEEARRRPV 240 EAAVLVKKSQ LSADDDDGSS CDENFDGGEA TAGLPEIEAR VSERTVLVKI HCENRKGALI 300 TALSEVETIG LTIMNTNVLP FTSSSLDITI MATAGENFSL SVKDIVKKLN QAFKLSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 180 | 234 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 180 | 234 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 180 | 234 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 180 | 234 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 180 | 234 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 180 | 234 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 180 | 234 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 180 | 234 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 183 | 188 | ERKRRE |
2 | 184 | 189 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK120539 | 0.0 | AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627848.1 | 0.0 | transcription factor bHLH18 | ||||
Refseq | XP_015627849.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A0D9ZCH7 | 0.0 | A0A0D9ZCH7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G32210.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22750.2 | 2e-46 | bHLH family protein |