PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 319aa MW: 34054.7 Da PI: 4.2552

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G30120.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.2	8.3e-17	215	251	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ OGLUM03G30120.1 215 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 251 **********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.698	74	109	IPR010399	Tify domain
SMART	SM00979	6.8E-10	74	109	IPR010399	Tify domain
Pfam	PF06200	2.3E-12	77	108	IPR010399	Tify domain
PROSITE profile	PS51017	13.364	143	185	IPR010402	CCT domain
Pfam	PF06203	1.3E-14	143	183	IPR010402	CCT domain
SMART	SM00401	9.7E-9	209	262	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	8.524	209	268	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.65E-11	213	259	No hit	No description
CDD	cd00202	9.31E-17	214	269	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-13	214	254	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	215	242	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.2E-14	215	251	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MPDAAAAAAA AQDADAVMRD APADAAAGGG DNDDDDGDDG TEEDEEEDDD EEGDEEELPP 60 AEDPAAPEPV SALLPGSPNQ LTLLFQGEVY VFESVTPEKV QAVLLLLGSS EMPPGLANMV 120 LPNQRENRGY DDLLQRTDIP AKRVASLIRF REKRKERNFD KKIRYAVRKE VALRMQRRKG 180 QFAGRANMEG ESLSPGCELA SQGSGQDFLS RESKCQNCGT SEKMTPAMRR GPAGPRTLCN 240 ACGLMWANKG TLRNCPKAKV ESSVVATEQS NAAVSPSGID NKELVVPNPE NITASHGEVM 300 GDSTPANEAE IGAPKAQSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250\|UniProtKB:Q8LAU9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By drought and salt stresses. {ECO:0000269\|PubMed:19618278}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105025	0.0	AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628049.1	0.0	GATA transcription factor 18
Swissprot	Q10F25	0.0	GAT18_ORYSJ; GATA transcription factor 18
TrEMBL	A0A0D9ZBQ0	0.0	A0A0D9ZBQ0_9ORYZ; Uncharacterized protein
STRING	OGLUM03G30120.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3460	37	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	1e-67	ZIM-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]