PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G28710.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 618aa    MW: 66033.2 Da    PI: 5.7894
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G28710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR11026e-3212113291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                      fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+            + + rrtra+tr+gCka+++vkk+++g+w vtkle+
  OGLUM03G28710.1  12 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNevspvaagsgedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWAVTKLET 105
                      ********************************************************99999********************************* PP

             FAR1  84 eHnHelap 91 
                       HnH+l+p
  OGLUM03G28710.1 106 AHNHPLVP 113
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-3012113IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MEFDDEEDAW TFYNVYAHRV GFSTRISVMH RSRRDGSIMS RQFVCAKEGF RTYRGKNEVS  60
PVAAGSGEDS GRGRRTRAVT RVGCKAMIRV KKQDNGRWAV TKLETAHNHP LVPPNQAHCL  120
RPHKPLSECG KQRQFGIPRN GGMLLAIEPP PPPISPPVPQ TSELVNCINM PETIDEFEVN  180
FKALISKVGP GNSEWLYSVY NCRQHWVPVY LRDTFFGDES SKEDLCREAL RYAEEGASSV  240
EVYIVAMQAL QEAANKVNMA KRGIGQVAPN APLAVMPIAA QLPAEGFRNV PEISFNQRKK  300
RKRNSNNKTT ENSSNQLMYL QQPVNFLFVA PGTSSGPQGP SQIVAAVPVS SSAPHGQTSS  360
ANHPSDGNTT SCSVAAQKNS DLSNYSGSAP SLGNVVPEGE IKSSGFASQI KESHELSQGN  420
GNKGNNVNMA SSTSSPQLVT VPVGLCLPSM DSSKISADAI NSTNSGSMIS NGNVSFGLCQ  480
SQSTNADPWS TPEGSSIRAA AIAAGARIAS PSDAASIIKA AQSKGAIHIR PGEGVPNYLK  540
PLAPQPLSSL PPGSIPNSVH PSSSHAQPGQ CSFGDSAAAK DAIFGSTDSS DDDEYDEDDD  600
TDDNDEDEGI TGDEVEQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302RKKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200580.0AK120058.1 Oryza sativa Japonica Group cDNA clone:J013001C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631605.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A0D9ZB840.0A0A0D9ZB84_9ORYZ; Uncharacterized protein
STRINGOGLUM03G28710.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-23FAR1-related sequence 5