PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G28630.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 513aa    MW: 56110.1 Da    PI: 7.3733
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G28630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like673.3e-21357411455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 
                      lrW+ +LH+ Fveav+  GG+ +A P ++   +++m+v gLt +++kSHLQkYR 
  OGLUM03G28630.1 357 LRWSDDLHKMFVEAVAYHGGPYEAKPTAVketMQAMGVTGLTTHNIKSHLQKYRE 411
                      89************************777222667889****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000811.5E-177592IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF517351.74E-4775275IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7205.1E-5276285IPR016040NAD(P)-binding domain
PfamPF001064.4E-4376271IPR002347Short-chain dehydrogenase/reductase SDR
CDDcd052331.00E-4976290No hitNo description
PRINTSPR000811.5E-17151162IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000805.3E-6151162IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000805.3E-6207215IPR002347Short-chain dehydrogenase/reductase SDR
PROSITE patternPS000610215243IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000811.5E-17228247IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000805.3E-6228247IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000811.5E-17252269IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF466893.05E-12351413IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-19353412IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-16357411IPR006447Myb domain, plants
PfamPF002499.9E-6358410IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015996Biological Processchlorophyll catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0034256Molecular Functionchlorophyll(ide) b reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAATAAYLPL RAQAQVGLAP LRPSGSAAAG ARLPGRTARR RLAARGGPEA AGIRAEAVPG  60
GGGVARRAAM VPPYNVLITG STKGIGYALA KEFLKAGDNV VICSRSAERV ESAVTDLKKE  120
FGEQHVWGIV CDVREGKDVK ALVDFARDKM KYIDIWINNA GSNAYSYKPL VETSDEALME  180
VITTNTLGLM ICCREAINMM RNQPRGGHIF NIDGAGSDGR PTPRFAAYGA TKRSVVHLTK  240
SLQAELQMNE VNNVMVHNLS PGMVTTDLLM SGATTKQVAD YLVPNIRAIP TNQSMKPTYI  300
RFLTGLKAYS RIFSRIAFGA RRNKIMSNSQ PAQEDDCMSS ILVSRLIRAM QPTRSYLRWS  360
DDLHKMFVEA VAYHGGPYEA KPTAVKETMQ AMGVTGLTTH NIKSHLQKYR ESFSSGVGSL  420
HDHDLLRTTS PSKEALDLAS EMVRDNDAAM AEIEMLNDLL LDHDIEMMER ELMSEIKLIE  480
HNFEISESAL DEYMDDLANY AFDLTGPANS SSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vl8_A1e-187729725235Gluconate 5-dehydrogenase
1vl8_B1e-187729725235Gluconate 5-dehydrogenase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for chlorophyll b degradation.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2550260.0AB255026.1 Oryza sativa Japonica Group NOL1 mRNA for short-chain dehydrogenase/reductase NOL1, complete cds.
GenBankAK2878690.0AK287869.1 Oryza sativa Japonica Group cDNA, clone: J065203M24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628274.10.0chlorophyll(ide) b reductase NOL, chloroplastic isoform X2
SwissprotQ84ST40.0NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBLA0A0D9ZB760.0A0A0D9ZB76_9ORYZ; Uncharacterized protein
STRINGOGLUM03G28630.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109381212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.12e-13G2-like family protein
Publications ? help Back to Top
  1. Kusaba M, et al.
    Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence.
    Plant Cell, 2007. 19(4): p. 1362-75
    [PMID:17416733]
  2. Sato Y, et al.
    Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.
    Plant J., 2009. 57(1): p. 120-31
    [PMID:18778405]