PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27730.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 540aa    MW: 56457.4 Da    PI: 7.208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-133603991155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  OGLUM03G27730.1 360 RRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 399
                      8******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.596349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12353404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15360407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-13360403No hitNo description
SuperFamilySSF474591.7E-15360411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10360399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAQGSS  60
AAVQEDEAGL WFPFALADSL DKDIFSDLFY EAPVAATAAA APAGPGAGAD GEGKTCKGDT  120
AMAEEERGGP GAASEAPREL MPPPKSTHAS CSRQQTMSLA DGGDNAGDLS ELVRARRSSG  180
GAARRKAEAG GGGGGASSSM LSAIGSSICG SNQVQVQQRT ASEPGRRGAP PSAVGSANAI  240
PCGGRGHGHG HEATTVASSS GRSNCCFGTT TTTEPTSTSN RSSKRKRLDT TEDSESPSED  300
AESESAALAR KPPAKMTTAR RSRAAEVHNL SERVRPNPFL LVFNAMGSCL TLMPLAPFVR  360
RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL QLQMMWMGSG MAPPVMFPGV  420
HQYLPRMGVG MGAAAAAAMP RMPFMAAPQP VVPTPPVNHL ADGSPGYRGH MPAAAAAAVG  480
LAEPYAHYLG VNHLQPPPTQ GVGYYPLGAK AVQQQQNPPL HVPNGSIMPP ENAPNTGSGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605050.0AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880142.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3
TrEMBLA0A0D9ZAV30.0A0A0D9ZAV3_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27730.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-28phytochrome interacting factor 3