 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OGLUM03G21860.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MYB |
| Protein Properties |
Length: 354aa MW: 37738 Da PI: 4.9234 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM03G21860.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.9 | 8.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+ Ed++lv +++++G g W + +++ g++R++k+c++rw++yl
OGLUM03G21860.2 14 RGAWTAMEDDILVSYIAKHGEGKWGALPKRAGLKRCGKSCRLRWLNYL 61
89********************************************97 PP
|
| 2 | Myb_DNA-binding | 45.5 | 1.8e-14 | 67 | 122 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47
rg+ + +E+el+++++++lG++ tW++Ia +++ gRt++++k++w++
OGLUM03G21860.2 67 RGNISGDEEELILRLHTLLGNRprrfynydllTWSLIAGRLP-GRTDNEIKNYWNST 122
6777889***********************************.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MGRKPCCSKE GLNRGAWTAM EDDILVSYIA KHGEGKWGAL PKRAGLKRCG KSCRLRWLNY 60
LRPGIKRGNI SGDEEELILR LHTLLGNRPR RFYNYDLLTW SLIAGRLPGR TDNEIKNYWN 120
STLSKRVAMQ RTAAATSMPA AATTSSNADA AGAAARRRRS PEPRTVVVSP IRTKALRCNN 180
NSSSGIVVVQ QAGACSHGGR PPESGAPGDA AADKVATPQA VQQQQQQQQQ ELAGADDDDD 240
LPVPAVCIDL DLDDIELGGL DGFLISPWRG GGHDDDNAAA AGAVPNLPMP IGYELGGGGG 300
GGGEAGAVDL EALLGQLDAG EDDDGDHHHH QQEEVPSSLG DEDDDYLELA PWLL
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC113433 | 0.0 | AC113433.8 Oryza sativa chromosome 3 BAC OSJNBb0108E08 genomic sequence, complete sequence. |
| GenBank | AK110683 | 0.0 | AK110683.1 Oryza sativa Japonica Group cDNA clone:002-169-H06, full insert sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
