PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM03G15460.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 488aa MW: 53048.3 Da PI: 9.8153 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.4 | 2e-10 | 203 | 233 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k+ rr+++NReAAr+sR+RKka++++Le OGLUM03G15460.2 203 QKVLRRLAQNREAARKSRLRKKAYVQQLESS 233 5899************************974 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.2E-7 | 200 | 263 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.875 | 202 | 246 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.1E-7 | 204 | 234 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 1.16E-20 | 204 | 256 | No hit | No description |
SuperFamily | SSF57959 | 7.88E-7 | 205 | 247 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.3E-8 | 206 | 246 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 207 | 222 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.5E-33 | 286 | 361 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 488 aa Download sequence Send to blast |
MVQVLPQGKP IYNSLLPRLS SVPLLTKPHC SVGPWTHLSA TRPFSPTPPS FNPLTRAHAP 60 SPVVAFLASP LSLPSDQPDL GASPHLSLSL SARCRLDPAS TAEAAPGGGR RQLGSSESEH 120 GGGLSPRSPR RGGDSGISVI LGHLKVACIP VTKPGMADAS SRTDTSTVLD TDDKNQMVDG 180 QSGAIVPSNS SDRSDRSDKP MDQKVLRRLA QNREAARKSR LRKKAYVQQL ESSKLKLASL 240 EQEINKARQQ GIYISSSGDQ THAMSGNGAM TFDLEYARWL EEQNKQINEL RTAVNAHASD 300 SDLRLIVDGI MAHYDEIFRL KGVAAKADVF HILSGMWKTP AERCFLWLGG FRSSELLKLL 360 VNQLEPLTEQ QLLGLSNLQQ SSQQAEDALS QGMEALQQSL ADTLAGSLGP SGSSGNVANY 420 MGQMAMAMGK LGTLENFLRQ ADNLRQQTLH QMQRILTIRQ AARALLAIHD YFSRLRALSS 480 LWLARPRE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK242257 | 0.0 | AK242257.1 Oryza sativa Japonica Group cDNA, clone: J075183E21, full insert sequence. | |||
GenBank | AY620414 | 0.0 | AY620414.1 Oryza sativa (japonica cultivar-group) clone OSJNBa0005J15 bZIP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632465.1 | 0.0 | transcription factor TGA2.2 | ||||
Refseq | XP_015632466.1 | 0.0 | transcription factor TGA2.2 | ||||
Refseq | XP_015632467.1 | 0.0 | transcription factor TGA2.2 | ||||
Swissprot | Q6IVC3 | 0.0 | TGA22_ORYSJ; Transcription factor TGA2.2 | ||||
TrEMBL | A0A0D9Z6G9 | 0.0 | A0A0D9Z6G9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G15460.2 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-137 | TGACG motif-binding factor 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|