PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G15460.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 423aa MW: 45761.8 Da PI: 10.0401

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G15460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	203	233	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k+ rr+++NReAAr+sR+RKka++++Le OGLUM03G15460.1 203 QKVLRRLAQNREAARKSRLRKKAYVQQLESS 233 5899************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.2E-7	200	263	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.875	202	246	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-7	204	234	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.43E-7	205	247	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.5E-8	206	246	No hit	No description
PROSITE pattern	PS00036	0	207	222	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MVQVLPQGKP IYNSLLPRLS SVPLLTKPHC SVGPWTHLSA TRPFSPTPPS FNPLTRAHAP 60 SPVVAFLASP LSLPSDQPDL GASPHLSLSL SARCRLDPAS TAEAAPGGGR RQLGSSESEH 120 GGGLSPRSPR RGGDSGISVI LGHLKVACIP VTKPGMADAS SRTDTSTVLD TDDKNQMVDG 180 QSGAIVPSNS SDRSDRSDKP MDQKVLRRLA QNREAARKSR LRKKAYVQQL ESSKLKLASL 240 EQEINKARQQ GIYISSSGDQ THAMSGNGAM TFDLEYARWL EEQNKQINEL RTALLVNQLE 300 PLTEQQLLGL SNLQQSSQQA EDALSQGMEA LQQSLADTLA GSLGPSGSSG NVANYMGQMA 360 MAMGKLGTLE NFLRQADNLR QQTLHQMQRI LTIRQAARAL LAIHDYFSRL RALSSLWLAR 420 PRE

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MVQVLPQGKP IYNSLLPRLS SVPLLTKPHC SVGPWTHLSA TRPFSPTPPS FNPLTRAHAP  60
SPVVAFLASP LSLPSDQPDL GASPHLSLSL SARCRLDPAS TAEAAPGGGR RQLGSSESEH  120
GGGLSPRSPR RGGDSGISVI LGHLKVACIP VTKPGMADAS SRTDTSTVLD TDDKNQMVDG  180
QSGAIVPSNS SDRSDRSDKP MDQKVLRRLA QNREAARKSR LRKKAYVQQL ESSKLKLASL  240
EQEINKARQQ GIYISSSGDQ THAMSGNGAM TFDLEYARWL EEQNKQINEL RTALLVNQLE  300
PLTEQQLLGL SNLQQSSQQA EDALSQGMEA LQQSLADTLA GSLGPSGSSG NVANYMGQMA  360
MAMGKLGTLE NFLRQADNLR QQTLHQMQRI LTIRQAARAL LAIHDYFSRL RALSSLWLAR  420
PRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB051294	0.0	AB051294.1 Oryza sativa OsNIF1 mRNA for bZIP transcription factor, complete cds.
GenBank	AK242257	0.0	AK242257.1 Oryza sativa Japonica Group cDNA, clone: J075183E21, full insert sequence.
GenBank	AY620414	0.0	AY620414.1 Oryza sativa (japonica cultivar-group) clone OSJNBa0005J15 bZIP transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068691.1	1e-133	transcription factor TGA6 isoform X2
Swissprot	Q6IVC3	1e-81	TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBL	A0A0D9Z6G8	0.0	A0A0D9Z6G8_9ORYZ; Uncharacterized protein
STRING	OGLUM03G15460.2	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	4e-40	bZIP family protein

Publications ? help Back to Top
Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20 [PMID:15986920] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]