PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G13830.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 268aa    MW: 28953.8 Da    PI: 9.6873
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G13830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.72.9e-082194270
         trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70
                     W++ e+ aL++a   ++ r   g l+ ++W++ ++++     +++   r+  qCk++++ l+kr k+++ ++k+
  OGLUM03G13830.1 21 WSDGETSALLDAWGPRHIRAAGGPLRTADWRACAAAVtarraAAGRAPRTVDQCKNRLDYLKKRLKAERSRSKG 94
                     *************************************9999888889********************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-132096No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MATRRRAAAP PQPPAWTPEP WSDGETSALL DAWGPRHIRA AGGPLRTADW RACAAAVTAR  60
RAAAGRAPRT VDQCKNRLDY LKKRLKAERS RSKGAPAPPP PPPSVDRLRA LLRLAPSVPP  120
GFTSRGGAMP KVGEEEQEEE EEKAESFAAP LPRSWPSVPK RPRTAVALLP LSSSSGHQHG  180
DGGVTPCTEV AAALDRLAGT YERVEVAKQK EATRLEERRL EAMRDLEIER MRILVDVAIS  240
ASAVADTATA ASSSWLAAMQ DERLDCLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131300.0AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629393.11e-176uncharacterized protein LOC4332525
TrEMBLA0A0D9Z5V80.0A0A0D9Z5V8_9ORYZ; Uncharacterized protein
STRINGOGLUM03G13830.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140221313