PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G13820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 217aa MW: 24107.4 Da PI: 10.0222 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 30.7 | 8.1e-10 | 21 | 103 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W++ e+ aLi+a ++ + +rg l +++W++ ++++ + r +r+ qC+ + + l+ ryk++ + s +++f++ OGLUM03G13820.1 21 WSDGETAALIDAWGPLHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRAQCRARVQTLKERYKRELAKPPP------SGWRHFSR 103 ***************************************999888889*******************98665553......24555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.0E-17 | 19 | 106 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSSSKPSPQQ QQQQQRANEW WSDGETAALI DAWGPLHVAR SRGPLPAKDW RAAASAVNAR 60 RAAAGRRHNR TRAQCRARVQ TLKERYKREL AKPPPSGWRH FSRLQEFLLA GPPPGFPPKT 120 MPPASVKKEE EEEEECQDEA VGGGGGSGGL LGRWVVPTRP RNGAAAWCPV GVVVTKLAEV 180 YERVELARLE VEKEKVAMEM EKAMQEAVKL KEEKLDT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213130 | 0.0 | AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880270.1 | 1e-115 | uncharacterized protein LOC4332524 | ||||
TrEMBL | A0A0D9Z5V7 | 1e-154 | A0A0D9Z5V7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G13820.1 | 1e-155 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14753 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.2 | 9e-08 | sequence-specific DNA binding transcription factors |