PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G12700.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 167aa    MW: 16974.5 Da    PI: 7.9188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G12700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00142850123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  OGLUM03G12700.1 28 FECKTCNRQFPSFQALGGHRASH 50
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-82693No hitNo description
PROSITE profilePS501579.8272855IPR007087Zinc finger, C2H2
SMARTSM003550.162850IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-132852IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
PfamPF139123.4E-97095IPR007087Zinc finger, C2H2
SMARTSM003552.57193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MARILLLFSG AHGGGGGAAA ASPPERMFEC KTCNRQFPSF QALGGHRASH KKPRLADGDP  60
AAEAPAKPKV HGCSICGLEF AVGQALGGHM RRHRAVMADG LGLGLSLGLG IGVVGQSDDG  120
GGKKKAAAAA AAELVFDLNA PAIEEEPDRA RPAGLAVEFP VVVDFPC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370690.0AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAK1113380.0AK111338.1 Oryza sativa Japonica Group cDNA clone:002-181-F05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8331990.0CT833199.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN044A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630125.15e-87zinc finger protein ZAT7
SwissprotQ9SLD41e-23ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0D9Z5H01e-113A0A0D9Z5H0_9ORYZ; Uncharacterized protein
STRINGOGLUM03G12700.11e-114(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.14e-27C2H2 family protein