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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OGLUM03G07230.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
HD-ZIP |
Protein Properties |
Length: 247aa MW: 26664 Da PI: 6.9419 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM03G07230.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58.8 | 9.3e-19 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq + Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
OGLUM03G07230.1 69 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 122
56689***********************************************99 PP
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2 | HD-ZIP_I/II | 113.6 | 1.3e-36 | 69 | 159 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +L+e+l+
OGLUM03G07230.1 69 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLA 159
9**************************************************************************************9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MSREEDEKLL FPSFAFPAEC FPEAATSGGE QKKARQRRRR KVKPEAAAAA AAAAAAALAG 60 ESGGDEQAKK RRLSDEQARF LEMSFKKERK LETPRKVQLA AELGLDAKQV AVWFQNRRAR 120 HKSKLMEEEF AKLRSAHDAV VLQNCHLETE LLKLKERLAD VEEEKAKLAA VAAATTGGGG 180 GGGGGSSSPS SSSFSTVTYH PALAGQFGVE AVAEEADLTY MSEYAYNSYM LELAAAGYCG 240 GVYDQFS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 175 | 185 | TGGGGGGGGGS |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK073446 | 0.0 | AK073446.1 Oryza sativa Japonica Group cDNA clone:J033043C24, full insert sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Gao S,Fang J,Xu F,Wang W,Chu C
Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1. Plant Cell, 2016. 28(3): p. 680-95 [PMID:26977084]
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