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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G07180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 546aa MW: 56947.4 Da PI: 8.5509 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OGLUM03G07180.1 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ OGLUM03G07180.1 134 WKCDKCSKKYAVQSDWKAHTKTC 156 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.19E-7 | 57 | 80 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 99 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.2E-4 | 122 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.19E-7 | 129 | 154 | No hit | No description |
SMART | SM00355 | 140 | 134 | 154 | IPR015880 | Zinc finger, C2H2-like |
PRINTS | PR01217 | 4.8E-9 | 211 | 223 | No hit | No description |
PRINTS | PR01217 | 4.8E-9 | 225 | 241 | No hit | No description |
PRINTS | PR01217 | 4.8E-9 | 251 | 263 | No hit | No description |
PRINTS | PR01217 | 4.8E-9 | 264 | 285 | No hit | No description |
PRINTS | PR01217 | 4.8E-9 | 340 | 365 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MEVETSSGTA ERGAGAGAQQ QPPPQPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRS GKEVRKRVYV CPEPTCVHHD PSRALGDLTG 120 IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHTKTCGSRE YRCDCGTLFS RRDSFITHRA 180 FCDALAEESA KARAAPPPPA DEDGTSASAG APPPQAPLPP PAPVPAPAPP PPPAAAPAPA 240 AQPEQRDRDA ALDQFATPAP PPPPVTAPPP PPVAAPNDCV SSSSSGVAPT SQSLLSSMFA 300 PPSVAQAPQY ADPIGVGAGG HQERAVPAKP PALCLAPNAS SSLFTAPVPA DRQQFAPPPP 360 PSPSPHMSAT ALLQKAAQMG ATSSSSSFLR CLGLDMSSSS SAPPSSSGQQ QQHHHHHHQE 420 TMQVPLPASS LPEWPPRLQP EPSPMLSSGL GLGLPYDATG GPVSLPELMM GQSTLFSAKP 480 ATLDFLGLGV SPTGASTSRG FPTFIQPIGG AVSLAGSATV AAETFGAAHG GQANPWERNP 540 SSSPIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-35 | 130 | 191 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-35 | 130 | 191 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC115687 | 0.0 | AC115687.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence. | |||
GenBank | AC116426 | 0.0 | AC116426.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632656.1 | 0.0 | protein indeterminate-domain 1 | ||||
Swissprot | Q9LVQ7 | 1e-137 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A0D9Z3F3 | 0.0 | A0A0D9Z3F3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G07180.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 6e-95 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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