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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G06680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 1021aa MW: 114416 Da PI: 5.6628 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 176.7 | 2.9e-55 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +fq OGLUM03G06680.1 20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 113 55599***************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rr+yw+Lee++ +ivlvhylevk OGLUM03G06680.1 114 RRSYWMLEEDYMHIVLVHYLEVK 136 ********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.727 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.2E-76 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.5E-48 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.1E-7 | 432 | 517 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.56E-17 | 434 | 519 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 5.5E-8 | 434 | 509 | IPR002909 | IPT domain |
CDD | cd00102 | 0.00341 | 434 | 521 | No hit | No description |
SuperFamily | SSF48403 | 1.04E-16 | 623 | 727 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.3E-18 | 625 | 731 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.09E-13 | 626 | 724 | No hit | No description |
PROSITE profile | PS50088 | 8.763 | 632 | 664 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.059 | 632 | 736 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.013 | 665 | 694 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 8.843 | 665 | 697 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1400 | 704 | 733 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 4.78E-8 | 836 | 889 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.075 | 838 | 860 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.407 | 839 | 868 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0033 | 840 | 859 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 861 | 883 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.578 | 862 | 886 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.0E-4 | 864 | 883 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071275 | Biological Process | cellular response to aluminum ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1021 aa Download sequence Send to blast |
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML 120 EEDYMHIVLV HYLEVKAGKL SSRSTGHDDV LQASHADSPL SQLPSQTTEG ESSVSGQASE 180 YDETESAYLK QNSVQQIFIR EEPDTTLSLG CGSMKMEVDL YQGLQATAPN TGFYSHGQDN 240 LPVVLNESDL GTAFNGPNSQ FDLSLWIEAM KPDKGTHQIP LYQAPVPSEQ SPFTGGPGIE 300 SFTFDEVYNN GLSIRDVDGD DTDGETPWQI PNASGTFATV DSFQQNDKTL EEAINYPLLK 360 TQSSSLSDII KDSFKKNDSF TRWMSKELAE VDDSQITSSS GVYWNSEEAD NIIEASSSDQ 420 YTLGPVLAQD QLFTIVDFSP TWTYAGSKTR VFIKGNFLSS DEVKRLKWSC MFGEFEVPAE 480 IIADDTLVCH SPSHKPGRVP FYVTCSNRLA CSEVREFDFR PQYMDAPSPL GSTNKIYLQK 540 RLDKLLSVEQ DEIQTTLSNP TKEIIDLSKK ISSLMMNNDD WSELLKLADD NEPATDDKQD 600 QFLQNRIKEK LHIWLLHKVG DGGKGPSVLD EEGQGVLHLA AALGYDWAIR PTIAAGVNIN 660 FRDAHGWTAL HWAAFCGRER TVVALIALGA APGAVTDPTP SFPSGSTPAD LASANGHKGI 720 SGFLAESSLT SHLQTLNLKE AMRSSAGEIS GLPGIVNVAD RSASPLAVEG HQTGSMGDSL 780 GAVRNAAQAA ARIYQVFRMQ SFQRKQAVQY EDENGAISDE RAMSLLSAKP SKPAQLDPLH 840 AAATRIQNKF RGWKGRKEFL LIRQRIVKIQ AHVRGHQVRK HYRKIIWSVG IVEKVILRWR 900 RRGAGLRGFR PTENAVTEST SSSSGNVTQN RPAENDYDFL QEGRKQTEER LQKALARVKS 960 MVQYPDARDQ YQRILTVVTK MQESQAMQEK MLEESTEMDE GLLMSEFKEL WDDDMPTPGY 1020 F |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00043 | PBM | Transfer from AT5G64220 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066651 | 0.0 | AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631248.1 | 0.0 | calmodulin-binding transcription activator 1 isoform X1 | ||||
TrEMBL | A0A0D9Z393 | 0.0 | A0A0D9Z393_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G06680.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |