PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G05600.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 545aa    MW: 57968.4 Da    PI: 7.6086
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G05600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-11252308155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  OGLUM03G05600.1 252 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 308
                      789******************333.44555535555.779999**************98 PP
2AP246.31e-14353402355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OGLUM03G05600.1 353 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 402
                      9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.37E-17252318No hitNo description
SuperFamilySSF541712.22E-14252318IPR016177DNA-binding domain
PROSITE profilePS5103216.871253316IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-12253317IPR001471AP2/ERF domain
SMARTSM003802.0E-22253322IPR001471AP2/ERF domain
PfamPF008471.1E-8253308IPR001471AP2/ERF domain
PRINTSPR003679.5E-6254265IPR001471AP2/ERF domain
CDDcd000183.49E-23351412No hitNo description
SuperFamilySSF541719.15E-18351412IPR016177DNA-binding domain
PROSITE profilePS5103219.203352410IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18352410IPR001471AP2/ERF domain
SMARTSM003802.9E-33352416IPR001471AP2/ERF domain
PfamPF008471.4E-9353402IPR001471AP2/ERF domain
PRINTSPR003679.5E-6392412IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MDMNNGWLGF SLSSSSARGY GDGCGEGNGG GDGDGSCSSP VAASPLVAMP LHSDGSVHYD  60
APDWRHAEAK DPKLEDFMSV SYSNKSSSNL YGSSSSSSCG HADQIKYHHV HDVQAFSTPS  120
FYGHGGSGVG IDINMNAPPA GCTGVLPDHR PPPPQQDHIF LPPHGQYFLG PPNPMAPAPM  180
YNAGGGGGGV VDGSMSISGI KSWLRQAMYV PERSAAALSL SVPAAPPSEA PLPPAAMPVV  240
RKPAQTFGQR TSQFRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQGGYD KEEKAARAYD  300
LAALKYWGPT THINFPLSTY EKELEEMKHM TRQEFIAHLR RNSSGFSRGA SMYRGVTRHH  360
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD ISKYDVKRIC  420
SSTHLIGGDL ACRRSPTRML PPDAPAGAAG VDVVVAPGDH QQISAGGGGA SDNSDTASDG  480
HRGAHLLHGL QYAHAMKFEA GESSGGGGDG ATTNWMAAAA AAARPVAGIP TTVHHQLPVF  540
ALWND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0904840.0AC090484.4 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629390.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ1PFE11e-119AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0D9Z2U70.0A0A0D9Z2U7_9ORYZ; Uncharacterized protein
STRINGOGLUM03G05600.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-113AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]