PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G05250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 91aa MW: 9981.2 Da PI: 8.5174 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25 | 3.3e-08 | 18 | 58 | 15 | 54 |
HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 +iN+ +++L+ llP++s + ++ + s + L++++ YIksL OGLUM03G05250.1 18 EINELISKLQALLPESSrSRSASRSSASKLLKETCSYIKSL 58 7**************6647777779999************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.693 | 3 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-9 | 17 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-9 | 17 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 18 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MSSRRGGGGG GGRITDEEIN ELISKLQALL PESSRSRSAS RSSASKLLKE TCSYIKSLHR 60 EVDDLSDRLS ELMSTMDNNS PQAEIIRSLL R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 12 | RGGGGGGGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241674 | 1e-148 | AK241674.1 Oryza sativa Japonica Group cDNA, clone: J065192H12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630063.1 | 1e-56 | transcription factor ILI3 | ||||
Swissprot | A2XD15 | 9e-58 | ILI3_ORYSI; Transcription factor ILI3 | ||||
Swissprot | Q10R47 | 9e-58 | ILI3_ORYSJ; Transcription factor ILI3 | ||||
TrEMBL | A0A0D9Z2Q4 | 5e-56 | A0A0D9Z2Q4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G05250.1 | 9e-57 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 1e-23 | bHLH family protein |