PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G03870.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1489aa    MW: 163187 Da    PI: 5.9875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G03870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0513791404123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C+++F +k +L+ H+r+ +
  OGLUM03G03870.1 1379 FQCDreFCDMTFETKAELRAHQRNiC 1404
                       899999*****************877 PP
2zf-C2H212.50.0004314041426323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  OGLUM03G03870.1 1404 CTdeSCGKRFSSHKYLKRHQCVH 1426
                       77778***************998 PP
3zf-C2H213.70.0001914621488123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg+sF+  s++ rH ++  H
  OGLUM03G03870.1 1462 YKCSapDCGQSFRYVSDYSRHRKKfnH 1488
                       99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132970IPR003349JmjN domain
PROSITE profilePS5118313.6053071IPR003349JmjN domain
PfamPF023754.3E-133164IPR003349JmjN domain
SuperFamilySSF511976.04E-27143182No hitNo description
SMARTSM005582.2E-45230416IPR003347JmjC domain
SuperFamilySSF511976.04E-27231412No hitNo description
PROSITE profilePS5118434.37233416IPR003347JmjC domain
PfamPF023734.0E-34263399IPR003347JmjC domain
PROSITE profilePS501578.53813791401IPR007087Zinc finger, C2H2
SMARTSM003552413791401IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00614021431IPR007087Zinc finger, C2H2
SMARTSM003552.314021426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.46E-614041438No hitNo description
PROSITE patternPS00028014041426IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-714081432IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.03E-1014261482No hitNo description
PROSITE profilePS5015711.96714321461IPR007087Zinc finger, C2H2
SMARTSM003556.6E-414321456IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-1114331456IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014341456IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-1014571484IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36514621489IPR007087Zinc finger, C2H2
SMARTSM003550.1414621488IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014641488IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1489 aa     Download sequence    Send to blast
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLASSYDAPA PSPAAASDSS IPPSSSSSPP PASAAVFTTR  120
HQELGNPRRG RPTPQVLKQV WQSGERYTLD QFVSKSRAFS KTHLAGLHEP TALAVESLFW  180
KASADRPIYI EYANDVPGSG FAAPVQLQRK KKRKRETAPM DGWEKSSGWR LSNSPWNLQA  240
IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH DLHSLNFLHT GAPKTWYAVP  300
GDRAVELEEV IRVHGYGGNT DRIGICLILC FFIQILCSCD ASLAVLGEKT TLMSPEVLID  360
NGVPCCRLVQ YPGEFVVTFP RAYHVGFSHG FNCGEAANFA TPQWLKFAKE AAVRRAVMNY  420
LPMLSHQQLL YLLAVSFISR NPRELLSGIR TSRLRDRKKE DRELLVKQEF LQDMISENEL  480
ICSFLGKKSV DNVVLWEPDL LPSLTALHPC SSCSKAPEKK GEDGPRIGST QSSSKDDSSS  540
DGTACMTGTQ SKGLSMDSKQ APEGEKLDTD DGDDLPFDLS IDSGSLTCVA CGILGYPFMA  600
ILQPSRKALE EISLVDKERY KLSCEKEICS NVLPCSPNDG SSGCPLIANR SSSPVENANL  660
SHQDVKPIRS DISLMGKEFN GTLGKHIGTS CSCSSENTID PYGDTETPEK KIPSDCPGSE  720
LSKQSGRGDV NVPDVEGSDE TISWNTGCAF ARPRIFCLQH ALEIEELLAS KGGVHALIIC  780
HADYVKLKAL AISIAEEIEF QFDYKDVALA NASKSDLHLI NISIDDEGYE EEGTDWTSRM  840
GLNLKHSSKI RKETSESQEQ PPLSFWGLFS KPSPISVVSN LKWLCRKART PYKVIGYASS  900
PDVVATPDKV KPAVTETQID TSGNAHENIG SEQTLQQDCV LQESNDVADM CKRPKVNDQD  960
GHSLINIPIA VAEYPMMHQV CERPDSPTTV AVSAGKPTRE QCGAESTELS TVQQFLDNGL  1020
IAEGGSMNFI SNHEHLESDN ATSVCKDEQL QVQQDQLAMV LCNNPNTELV AGELHGGAAS  1080
STLENEDSCG NTSYYSDTVL KNSKPDTDDQ PETCDRSVVL VTPKSSCDQM ISSSDRSCSL  1140
TLDCPVSTDA AFSSEKLSMA HDLMGSELQA VHNSKAEVAA SLTDVKGAKL NSIHTAQLPH  1200
ESPSSDFIIS EGSQSASATA IPRKNGTSMH TESNSIDILL GVLADESKVS SGKDEVGKAS  1260
LTLMTLAGND QSADDVTQDE VAEITDTSHG FCASDIVSRS IGSSNRTNII CYARRKHKRK  1320
SGSEFNINSP QSLGSFVRSP CESLRPRTRP AIVEDMTNET KTAEASTANK RKKAKVEAFQ  1380
CDREFCDMTF ETKAELRAHQ RNICTDESCG KRFSSHKYLK RHQCVHRDER PFKCPWDGCP  1440
MTFKWLWAQT EHIRVHTGER PYKCSAPDCG QSFRYVSDYS RHRKKFNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-71234308346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-71234308346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214QRKKKRKR
2208214RKKKRKR
3208215RKKKRKRE
413131319RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0D9Z2590.0A0A0D9Z259_9ORYZ; Uncharacterized protein
STRINGOGLUM03G03870.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein