PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G02410.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 945aa MW: 104933 Da PI: 5.7264

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G02410.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.4	2.8e-28	623	673	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OGLUM03G02410.1 623 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 673 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	612	693	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-26	625	673	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.03E-22	845	929	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-25	845	929	No hit	No description
SMART	SM00666	2.0E-25	847	930	IPR000270	PB1 domain
PROSITE profile	PS51745	23.255	847	930	IPR000270	PB1 domain
Pfam	PF00564	1.2E-17	848	929	IPR000270	PB1 domain
CDD	cd06407	4.04E-43	848	929	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence Send to blast
MEQKPPPPPR REEEEEDGLM GCGMSGTGDI AGGDLDLMEE FLLATPGLDL SEFWHPGAAS 60 PFSPLFDIGS SVTTLTTPAP PAAEDDRDEA EMPSSGGGGG GGGLEVSPAH RGWTFQTAPQ 120 EVAVEPTVKE RLRRALERIA SQSQSQAQRG DGELLVQVWV PTRIGDRQVL TTCGQPFWLD 180 RRNQRLASYR TVSMKYQFSA DESARADLGL PGRVFVGRVP EWTPDVRYFS TEEYPRVQHA 240 QYFDIRGSVA LPVFEPRSRA CLGVVELVMT TQKVNYSAEI ENICNALKEV DLRSSDVSSD 300 PRSKVVDASY RAIIPEIMDV LRAVCDTHNL PLAQTWIPCI CQAKRGSRHS DESYKHCVST 360 VDEACYVRDR SVLGFHQACS EHHLFRGEGV VGRAFGTNEP CFSPDITTYS KTQYPLSHHA 420 KLFGLRAAVA IRLRSVKTGS LDFVLEFFLP MKCINTEEQR AMLNSLSNTI QQVCYTLRVV 480 KPKELVNDGP FEISQPTRPE FYAKSVHENL DELCSGINVP GRTTSLEASE EVSSWIASLV 540 DAQNKGGKGE IDVDLPFGFS KQDDEGFSVT AGWHTSPVMA PDGSMFSGFK RHEDYDVKEN 600 TCSSDPSNSN SDKAVEKRRT KTEKTVSLQD LRKHFAGSLK EAAKNLGVCP TTLKRICRQH 660 GINRWPSRKI KKVGHSLKKL QMVIDSVHGP EGTVQLSSLY ENFTKTTWSE RELQGDVHFP 720 ASEQNFQLEP SVPDRPCEGR FTSHTSGSNS ISPSCSQSSN SSLGCSSVPK TQQQHGSAPQ 780 LAVKEEISMD ENQCSTLIKS ASHEEAELQM FVEERPTMLF RSQSQVLLSE HKPIENLSNV 840 QKARSDSLKI KAIYGEERCI FRLQPSWGFQ RLKEEIVKRF GISQDTHVDL KYLDDESEWV 900 LLTCDADLLE CIDVYKSSSN QTVRILVNPS IQPLLNASFG QTGLS

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence Send to blast

MEQKPPPPPR REEEEEDGLM GCGMSGTGDI AGGDLDLMEE FLLATPGLDL SEFWHPGAAS  60
PFSPLFDIGS SVTTLTTPAP PAAEDDRDEA EMPSSGGGGG GGGLEVSPAH RGWTFQTAPQ  120
EVAVEPTVKE RLRRALERIA SQSQSQAQRG DGELLVQVWV PTRIGDRQVL TTCGQPFWLD  180
RRNQRLASYR TVSMKYQFSA DESARADLGL PGRVFVGRVP EWTPDVRYFS TEEYPRVQHA  240
QYFDIRGSVA LPVFEPRSRA CLGVVELVMT TQKVNYSAEI ENICNALKEV DLRSSDVSSD  300
PRSKVVDASY RAIIPEIMDV LRAVCDTHNL PLAQTWIPCI CQAKRGSRHS DESYKHCVST  360
VDEACYVRDR SVLGFHQACS EHHLFRGEGV VGRAFGTNEP CFSPDITTYS KTQYPLSHHA  420
KLFGLRAAVA IRLRSVKTGS LDFVLEFFLP MKCINTEEQR AMLNSLSNTI QQVCYTLRVV  480
KPKELVNDGP FEISQPTRPE FYAKSVHENL DELCSGINVP GRTTSLEASE EVSSWIASLV  540
DAQNKGGKGE IDVDLPFGFS KQDDEGFSVT AGWHTSPVMA PDGSMFSGFK RHEDYDVKEN  600
TCSSDPSNSN SDKAVEKRRT KTEKTVSLQD LRKHFAGSLK EAAKNLGVCP TTLKRICRQH  660
GINRWPSRKI KKVGHSLKKL QMVIDSVHGP EGTVQLSSLY ENFTKTTWSE RELQGDVHFP  720
ASEQNFQLEP SVPDRPCEGR FTSHTSGSNS ISPSCSQSSN SSLGCSSVPK TQQQHGSAPQ  780
LAVKEEISMD ENQCSTLIKS ASHEEAELQM FVEERPTMLF RSQSQVLLSE HKPIENLSNV  840
QKARSDSLKI KAIYGEERCI FRLQPSWGFQ RLKEEIVKRF GISQDTHVDL KYLDDESEWV  900
LLTCDADLLE CIDVYKSSSN QTVRILVNPS IQPLLNASFG QTGLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100046	0.0	AK100046.1 Oryza sativa Japonica Group cDNA clone:J013153P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629744.1	0.0	protein NLP1
Refseq	XP_015629745.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A0D9Z1N0	0.0	A0A0D9Z1N0_9ORYZ; Uncharacterized protein
STRING	OGLUM03G02410.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]