PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G01710.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 303aa    MW: 31733.1 Da    PI: 8.2175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G01710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14117168155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  OGLUM03G01710.1 117 QRMTHIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 168
                      79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15108175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-14115171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-12115168No hitNo description
PROSITE profilePS5088815.142116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEQWAAAAAA AADQAAASAG AGQMPFLALL QGAMEADGGG GGDGRKRHAA AAAFASCCPC  60
PPVADLDLLE SCVTQAAAPP VTAPATRAER RRKRPRPRPR AAPPPEKRKK PEEAENQRMT  120
HIAVERNRRR LMNDHLASLR SLIPSNYIPR GDQATVVGGA IDYVKQLEQQ LVALQAAAAE  180
RSGVGVVATA ATAASDGVFV SPQYTSYSEA RGGSGVDVEA TAAVGGHVRV RVAGRRWTGR  240
LVRAVAAMED LRLTVLHLAV TSVGHDAVVY CFNLKMEEGC EMATADEVAT VVHQIFAYAG  300
ACC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18999RRRKRPRPRPR
29197RKRPRPR
391109RKRPRPRPRAAPPPEKRKK
49296KRPRP
5117128RMTHIAVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104910.0AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629439.20.0transcription factor bHLH57
SwissprotQ9M1282e-51BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A0D9Z1C80.0A0A0D9Z1C8_9ORYZ; Uncharacterized protein
STRINGOGLUM03G01710.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.13e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]