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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G01010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 731aa MW: 77127.6 Da PI: 6.8416 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 98.9 | 4.4e-31 | 66 | 150 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ k+yk++k+g+ +r ++ +t+++f++lea OGLUM03G01010.1 66 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKTYRFFTELEA 150 8********************************************************************97..77778******985 PP | |||||||
2 | trihelix | 109.5 | 2.1e-34 | 421 | 506 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+eme+r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a OGLUM03G01010.1 421 RWPKAEVHALIQLRTEMETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 506 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0047 | 63 | 125 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.829 | 65 | 123 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.82E-28 | 65 | 130 | No hit | No description |
Pfam | PF13837 | 1.4E-21 | 65 | 151 | No hit | No description |
PROSITE profile | PS50090 | 7.213 | 414 | 478 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0037 | 418 | 480 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-4 | 419 | 477 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.6E-23 | 420 | 507 | No hit | No description |
CDD | cd12203 | 1.34E-29 | 421 | 485 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MQQPGMPPFS AAGGEGAPSP ISSRPPPPEQ AAAAAAEEQL NGSSLEHDGV LGGEEGDRGG 60 SSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAEMGYKR SAKKCREKFE 120 NVDKYYKRTK DGRAGRGDGK TYRFFTELEA LHGAAAATAR PPPVSLAPAP VAVAPPATPA 180 GLSALRVHAA PPPPVKQHAA PPPPVMDAAA CVMTMDDVSF SSGSDTEETA EEGGKRKRRG 240 GGGIGGGGGG GKAMRMFEGL MRQVMERQEA MQQRLLEAIE RRDQERMIRE EAWRRQEVAR 300 LAREQDALAQ ERAIAASRDA AVISFIQRVT GQSITAPPPP PLQPTPVASA APPPPPQHHH 360 QQIPPPIQIQ PHHIMPMTPQ PQLQPPQPQS KEASTVVRAA PPPQEQHDTA ASGGGGASSS 420 RWPKAEVHAL IQLRTEMETR YQDSGPKGPL WEDISAGMRR LGYSRSSKRC KEKWENINKY 480 FKKVKESNKK RPEDSKTCPY YHQLDALYRT KAANAAAAAA SASPAPATTT VLAPVPLSQT 540 PPHVDHGGSN GNGNGWASAN NGGGGSSSGG MQTKASNNGT ATAGGLPVVS VAGGNGNGNG 600 VAATTDNKGS KQVPVAKETA GQRQPQPLAM NHNYGNDRMA DDMDSDSMDD DDDDDEFDDD 660 EDDDDDIGGG KMQVQYETSS HFQRPQLQNQ NVVVGRPNAS GGGGGGGAPT TPAGPPPPAA 720 TSGTSFLACV Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 251 | RGGGGIGGGGGGGK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241800 | 0.0 | AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628078.1 | 0.0 | trihelix transcription factor GTL1 | ||||
TrEMBL | A0A0D9Z147 | 0.0 | A0A0D9Z147_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G01010.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-47 | Trihelix family protein |