PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G34320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 558aa MW: 59082.8 Da PI: 5.8522 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g OGLUM02G34320.1 33 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 82 69****998.**********9...336************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 32 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-34 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.575 | 33 | 90 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-10 | 33 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-18 | 33 | 91 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.07E-16 | 33 | 92 | No hit | No description |
PRINTS | PR00367 | 2.4E-8 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-8 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.90.960.10 | 9.3E-14 | 257 | 309 | IPR007214 | YbaK/aminoacyl-tRNA synthetase-associated domain |
SuperFamily | SSF55826 | 2.75E-19 | 261 | 400 | IPR007214 | YbaK/aminoacyl-tRNA synthetase-associated domain |
Gene3D | G3DSA:3.90.960.10 | 2.3E-14 | 310 | 403 | IPR007214 | YbaK/aminoacyl-tRNA synthetase-associated domain |
Pfam | PF04073 | 7.0E-5 | 313 | 343 | IPR007214 | YbaK/aminoacyl-tRNA synthetase-associated domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006450 | Biological Process | regulation of translational fidelity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0002161 | Molecular Function | aminoacyl-tRNA editing activity | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MVKSGQEAAP GSGGNAAAAA ARQGGGGGGR GRQYKGVRMR SWGSWVSEIR APNQKTRIWL 60 GSYSTAEAAA RAYDAALLCL KGSAADLNFP VHLPFHIPAA AMSPKSIQRV AAAAAANATS 120 PLQHHSGAAS FATATGGYNP AAAPTTPPCS YGDMSSCSAV SSPETANYYG ADHDMVARED 180 DVDYAALADI DAFFQSPKCM DYSMMDPCST FFSPAPESLA AEWEDEASHP NPRGRDSLAF 240 ALLVSFLPSA AAAAAARAMG YTKEQLLARL QELNIEFSCY DHPVVLTVEE QAKHVGHLGG 300 ALSKNLLLKR LGLGKGGLRM APEENLLEVL QVPLGCVTPF ALLNESASFF HGYAIAFLTD 360 SYNCVFASSA VSLLLDQALS SSNLDKFLMS IGRQPAYVDL EASPVVGKDN PPDLADLVPS 420 GVPKSAEPIE KVTPTNVPRQ NDVPKEKTCL PEVKAKPKVQ NKGAEKTQSK IPTNGANVEK 480 FVNDVFDIMS PLFLSEVSKK LNVKQEELSS IFDGFKEQAT IDLESVTTSL KNAAYTAGFE 540 AGFETMLNSG LKGQASRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 23 | 90 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004125 | 0.0 | AP004125.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1767_D02. | |||
GenBank | AP005287 | 0.0 | AP005287.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_A11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623167.1 | 0.0 | prolyl-tRNA synthetase associated domain-containing protein 1 | ||||
TrEMBL | A0A0D9YYM9 | 0.0 | A0A0D9YYM9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G34320.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8414 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 4e-26 | ERF family protein |