PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G34120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 25825.9 Da PI: 7.4288 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 120 | 170 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+W+AeIrdp+ r r +lg+f+tae+Aa+a++ a+++++g OGLUM02G34120.1 120 SRYRGVRRRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEDAARAYDVAALEFRG 170 79********.**********82....48*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-13 | 120 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-23 | 120 | 180 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.65E-31 | 120 | 180 | No hit | No description |
SMART | SM00380 | 5.2E-37 | 121 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 26.055 | 121 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-32 | 121 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVPRVERGGG GFHLPNSERE DSLFIRALIS VVSGDTTVPT LLPEPTMATV VAGAATCARC 60 GVDGCIGVDC EVVVLAAAAG SSSSDEEDEG ECTTGAVASG GVTGGVGKRR PRRRSGGEGS 120 RYRGVRRRPW GKWAAEIRDP RRAVRKWLGT FDTAEDAARA YDVAALEFRG QRAKLNFPAS 180 TAAQQPRPLL HHNLRENCGS NASSPVHAPE HARTAAAAKD QEIWDGLREI MMLDDGSFWS 240 MP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-22 | 116 | 178 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 113 | RRPRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624274.1 | 1e-174 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0D3FAV9 | 1e-175 | A0A0D3FAV9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YYK9 | 1e-175 | A0A0D9YYK9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GCB9 | 1e-175 | A0A0E0GCB9_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1P4K7 | 1e-175 | I1P4K7_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G34120.1 | 1e-175 | (Oryza glumipatula) | ||||
STRING | ONIVA02G33420.1 | 1e-175 | (Oryza nivara) | ||||
STRING | ORGLA02G0291300.1 | 1e-175 | (Oryza glaberrima) | ||||
STRING | OBART02G33690.1 | 1e-175 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 2e-16 | ERF family protein |